PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 530aa    MW: 57506.8 Da    PI: 9.6044
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033007.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-055476123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C+ C+k F r  nL+ H r H
  CCG033007.1 54 FICEVCNKGFQREQNLQLHRRGH 76
                 89*******************88 PP

2zf-C2H213.30.00025130152123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k++  +s+ k H +t+
  CCG033007.1 130 WKCEKCSKRYAVQSDWKAHSKTC 152
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121711.9E-55376IPR022755Zinc finger, double-stranded RNA binding
Gene3DG3DSA:3.30.160.601.3E-55476IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00525476IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.81E-75476No hitNo description
PROSITE profilePS5015710.995476IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
SMARTSM0035515095125IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.1E-5118151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.81E-7125150No hitNo description
SMARTSM00355130130150IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MAAASSSAPF FGRAREEHQN QIIQQHSSTA TSSTVPTTGP LKKRRNQPGT PSKFICEVCN  60
KGFQREQNLQ LHRRGHNLPW KLKQKTTKEV KRKVYLCPEP TCVHHDPSRA LGDLTGIKKH  120
YFRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTREYRCD CGTLFSRRDS FITHRAFCDA  180
LAQESARHPT SLNTIGSHLY GNNHMSLGLS QVGSQISHLQ DHHPSDNNML RLGSAGAANF  240
EHLIPPPNPS SMPMMPPSGF FMGDANQGPF PNKCLHGLMQ LPDLQSNTNN PSSASNLFNF  300
GFFSNNSNTG RTSNNDNANT GSTTTNFGSP GLLNANQFNN VNGAGHRTSV FPTNMSGDHV  360
GSAMSSLFNT SMQQENITPH VSATALLQKA AQMGSTTSSN SPSGLLRSLG SSSTTGAKSI  420
RPLVSTNFGS SFSNANVCES IETHMESESQ LQGLMNSLAN GSSSIFGNEQ DNSYTGFDSS  480
SFSKADEGNM HQGLAGSDKL TLDFLGVGGR VRNIGGGFPQ RQQQNGINNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34126187364Zinc finger protein JACKDAW
5b3h_F3e-34126187364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2786450.0GU278645.1 Populus balsamifera isolate STL13 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786460.0GU278646.1 Populus balsamifera isolate INU03 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786480.0GU278648.1 Populus balsamifera isolate POR11 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786500.0GU278650.1 Populus balsamifera isolate KUU07 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786520.0GU278652.1 Populus balsamifera isolate FBK13 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786530.0GU278653.1 Populus balsamifera isolate FBK13 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786540.0GU278654.1 Populus balsamifera isolate FRE01 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786550.0GU278655.1 Populus balsamifera isolate FRE01 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786560.0GU278656.1 Populus balsamifera isolate GAL12 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786570.0GU278657.1 Populus balsamifera isolate GAL12 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786580.0GU278658.1 Populus balsamifera isolate GIL14 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786590.0GU278659.1 Populus balsamifera isolate GIL14 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786600.0GU278660.1 Populus balsamifera isolate LOV02 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786610.0GU278661.1 Populus balsamifera isolate LOV02 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786620.0GU278662.1 Populus balsamifera isolate RNA13 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786630.0GU278663.1 Populus balsamifera isolate RNA13 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786640.0GU278664.1 Populus balsamifera isolate STO11 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786650.0GU278665.1 Populus balsamifera isolate STO11 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786660.0GU278666.1 Populus balsamifera isolate WHR03 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence.
GenBankGU2786670.0GU278667.1 Populus balsamifera isolate WHR03 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021690.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
SwissprotQ9ZUL31e-126IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A2K1YRN50.0A0A2K1YRN5_POPTR; Uncharacterized protein
STRINGPOPTR_0010s10940.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-105indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]