PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031351.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 463aa    MW: 52915.9 Da    PI: 9.5385
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031351.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000277394223
                 EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 +C++C++ Fs++  L  H++ H
  CCG031351.1 73 SCTYCKREFSTSQALGGHQNAH 94
                 7******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.7E-56999No hitNo description
PROSITE profilePS5015710.9077299IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SuperFamilySSF1019361.51E-15340455IPR015300DNA-binding pseudobarrel domain
CDDcd100175.95E-15342457No hitNo description
Gene3DG3DSA:2.40.330.101.1E-17344456IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.3E-5344459IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MINLKMKEKV VNKIEPSTLL DSSSSPVLLD LKLSNDDSFG GSKLEFNLFS LINADANEST  60
DETLKPANSR VLSCTYCKRE FSTSQALGGH QNAHKQERAI AKRRQVMDVD AFAQFLYYPY  120
PNHSTHPYYG YFNKSLGKEM DSLICKPSSY PWNASSSGYH FGLGGWSRQA MMNAQPTSID  180
RLRMESLNSL NVLSLLTAME RQQLFHVSNS CSIFKKIKNP NKRKECECQQ AERELFAGSQ  240
PLFNEHPSWF KKPKTTSGIG SIVAASRNPG RVLNEPKLFD ENRVFKNSVD SDSRNKESAE  300
ELERRVAFNL RTMRSSFSLG DLLEERSRGV STQLSLYHHD PFEIKKKMKP SDLGNLCRLL  360
VSADLVEKYI LPFLNEDQTK QVKIPNQERN GLKVWVRDID TGSMHQLVFK RWSTSKSYIF  420
NDGWTKHFVK RRNLFEGDEI GLYWDNDQSR LHFSVLSRAA ATG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020969.10.0PREDICTED: uncharacterized protein LOC105123155
TrEMBLA0A3N7EUQ20.0A0A3N7EUQ2_POPTR; Uncharacterized protein
STRINGPOPTR_0003s19110.11e-169(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.11e-30B3 family protein