PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031213.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 546aa    MW: 60063.2 Da    PI: 6.0964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031213.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11362404754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  CCG031213.1 362 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 404
                  79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-16358422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9361404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14361410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-16362418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-12362408No hitNo description
CDDcd048732.12E-6475535No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MLSRLNSNSI WLEDHKEEQD STTNHHHHNN ITNTAAGCGG VMLEGKEEMG SLSTLKSMFE  60
VEDEWYVTNN NSTIHQNHQE SIKDLTFSPS LVDPDNLLLH QVDSSSSCSP SPSVFNNLDP  120
SQVHYFMHPK PTLSSLLNVV SNNPLEHGFD LSEIGFLENQ GTNSTTAANV SALLNRGSGV  180
LGNLGNFTDL SSNSQISIPN LCPDPQFSSS RTLQLPENGP GFNGFRGLDE ISGNQLFFNR  240
SKLLSPLETY PSMGAQPTLF QKRAALRKNL GEDERDKGKR EMTQISEEND KKRKFSSGDD  300
FLEDVSLDGS GLNYDSDEFT ENTKVEETGK NGGNSSKVNS GVTGGGVDQK GKKRGLPAKN  360
LMAERRRRKK LNDRLYMLRS VVPKISKMDR ASILGDAIEY LKELLQRIND LHNELESTPS  420
SSSLTPTTSF HPLTPTPSAL PSRIMDKLCP GSLPSPNGQP ARVEVRVREG RAVNIHMFCG  480
RKPGLLLSTM RALDNLGLDI QQAVISCFNG FAMDIFRAEQ CKEGQDMHPD QIKAVLLDSA  540
GFHGAM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351369KKRGLPAKNLMAERRRRKK
2363370ERRRRKKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM6272550.0HM627255.1 Populus suaveolens inducer of CBF expression 2 protein (ICE2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042960.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-136ICE1_ARATH; Transcription factor ICE1
TrEMBLB9I3Y80.0B9I3Y8_POPTR; Transcription factor ICE1 family protein
STRINGPOPTR_0012s10780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-112bHLH family protein