PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030984.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 331aa    MW: 37774.8 Da    PI: 8.3283
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030984.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065162178117
                  EEETTTTEEESSHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                  ++Cp C k+F+r  nL+
  CCG030984.1 162 FSCPLCFKTFNRYNNLQ 178
                  89***********9997 PP

2zf-C2H216.62.2e-05254276123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +CgksF  k + ++H +++
  CCG030984.1 254 FMCRKCGKSFAVKGDWRTHEKNC 276
                  89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.38E-6238274No hitNo description
Gene3DG3DSA:3.30.160.604.8E-6250274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.787254274IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MADPCFNLIT GSFNFMPLNP HYTAFTSYPN NHLFNTKSSI PFAQPQKEAP SLVEYLRPIR  60
QQEDHLESSS SSMEEDRNMK KDDENLFFST ADGNDKPVSV VLRIGLPNPS SNLQRVLGVS  120
PSANGPDKED ISAVSGYPLE KLNKDQYWIP TPSQILIGPS QFSCPLCFKT FNRYNNLQAC  180
HIFSKHMHMW GHGSQYRKGP DSLRGTQPTG MLRLRCYCYA QGCKHNIDHP RARPLKDFRT  240
LQTHYKRKHG IKPFMCRKCG KSFAVKGDWR THEKNCGKIW YCICGSDFKH KRSLKDHIKA  300
FGHGHAAFGI DCFEEEDELA SESEHDCESS M
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084790.0AC208479.1 Populus trichocarpa clone JGIACSB1081-D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025425.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-116ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2K1Z3R30.0A0A2K1Z3R3_POPTR; Uncharacterized protein
STRINGPOPTR_0009s06700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-112C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]