PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030844.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 327aa    MW: 36813.5 Da    PI: 7.4981
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030844.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.91.9e-06167186120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++Cp C+k+F+r  nL+ H+
  CCG030844.1 167 FSCPLCSKTFNRYNNLQMHM 186
                  89*****************9 PP

2zf-C2H215.84.1e-05251273123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk+F  k + ++H +++
  CCG030844.1 251 FMCRKCGKPFAVKGDWRTHEKNC 273
                  89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.63E-6160189No hitNo description
PROSITE profilePS5015710.783167194IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-5167186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.049167189IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
SuperFamilySSF576674.38E-6235271No hitNo description
Gene3DG3DSA:3.30.160.608.5E-5247271IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035572251271IPR015880Zinc finger, C2H2-like
SMARTSM00355150277300IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MADPCSNLFS TGSFNFVLLN PHYSTAFTSY SNPSSLHAFS NNYPLDNKSS IPPSSPPPKE  60
ALPLIEYLSP ARQQEEHRDS SCSSMEDDDN LFFSTADGNV ETVTVALHIG LPNPSSDLER  120
ALRVFPSPNA PDKEEMSAVS GYPLEKLYKG QYWIPTPSQI LIGPSQFSCP LCSKTFNRYN  180
NLQMHMWGHG SQYRKGPDSL RGTQPTAMLR LPCYCCAPGC KHNIDHPRAR PLKDFRTLQT  240
HYKRKHGIKP FMCRKCGKPF AVKGDWRTHE KNCGKIWYCI CGSDFKHKRS LKDHIKAFGH  300
GHVGIDCFEE EDELASESTE HDGESCM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084791e-164AC208479.1 Populus trichocarpa clone JGIACSB1081-D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011045.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-119ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A3N7ECC80.0A0A3N7ECC8_POPTR; Uncharacterized protein
STRINGPOPTR_0001s27490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-115C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]