PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030519.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 431aa    MW: 47691.6 Da    PI: 9.6011
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030519.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012290312123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y Cp C+k + ++ ++  H+ tH
  CCG030519.1 290 YICPRCKKICETSQTFAAHMLTH 312
                  89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.19E-5279313No hitNo description
PROSITE patternPS000280292312IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MASNNFNVSS SSIVHENSLV LSLNSNLAQD HVDGHGRIIP QSLAPTIAVQ PNNLFVPQRA  60
GLGQIAMGQR LSEVRRNHVS SLSVRIHTII EYLPTEQNQI EALPLHPTSD YTVTEIPRTT  120
QFLPPASPRE LIVAPNHNNV HLQSLNPNGG FRIQGQPNFQ NHNLTMSNQV NQHNAYLPYS  180
PPNRQMINFM NLDHLNHSHG NNDGVVLNPE PLSVYAPPGI SWARNPNLNL GQNQNLETSQ  240
FDIDQVRINP RDEARNIPDN QSSTSSEDEE EMGLDDGVTH SLPHQKYGPY ICPRCKKICE  300
TSQTFAAHML THYRVENKEQ RKRRLAAKNK KKNLHQIHSR GNGLTISPLG TENLQEVHSR  360
GIGLTISPVG TKSKVPLKVY VRRKKAAGGK AEMATSKRVV EDKAQKGQGN TVLDEASSSS  420
PVGLVNKGVP M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326332AKNKKKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025400.10.0PREDICTED: uncharacterized protein LOC105126279
TrEMBLB9GYK70.0B9GYK7_POPTR; Uncharacterized protein
STRINGPOPTR_0003s21710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1894066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42640.12e-15C2H2 family protein