PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030305.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 188aa    MW: 21256.6 Da    PI: 9.3178
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030305.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000324365123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C  C+++F ++  L  H++ H
  CCG030305.1 43 FQCLFCPRRFYTPQALGGHQNAH 65
                 89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.54E-54170No hitNo description
PROSITE profilePS5015710.4084370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MADPSLMHNF LNHQHQQHPS STSTPTKKSS TNLPIYPSSY RHFQCLFCPR RFYTPQALGG  60
HQNAHRRERA AQRRNNKTLN TPISTDPSLR KHSSFVNHNH PETTSPPAVT FLNQYHQLQA  120
LDPVMNRNYQ FPLPSSGVYV SVPQYGMLYD GSAATTSLEH DTGYRNDLSA ADDDPNVVTA  180
KIDLTLRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164520.0AC216452.1 Populus trichocarpa clone POP018-D02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010775.11e-138PREDICTED: zinc finger protein KNUCKLES-like
TrEMBLA0A2K1X4131e-87A0A2K1X413_POPTR; Uncharacterized protein
STRINGPOPTR_0017s08950.11e-108(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15014811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.14e-16C2H2 family protein