PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030166.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 343aa    MW: 38813.1 Da    PI: 8.6789
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030166.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.32.4e-104399155
          AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                 s y+GV++++++gr +++++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  CCG030166.1 43 SIYRGVTRHRWTGRHEVHLWDkNCWNEsQNKKGRQGAYDDEEVAAHAYDLAALKYWG 99
                 57*******************99998898888888********************98 PP

2AP231.34.9e-10139181146
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaa 46 
                  s+y+GV++++ +g W+A+I   +   g +k+ +lg+    eeAa+a+
  CCG030166.1 139 SKYRGVSRHHHNGGWEARIGRvF---G-NKYLYLGTLAPQEEAAAAY 181
                  89****************99966...3.6****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.23E-1443109No hitNo description
PfamPF008478.3E-74399IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-1343109IPR016177DNA-binding domain
PROSITE profilePS5103217.09544107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-1144108IPR001471AP2/ERF domain
SMARTSM003801.6E-1644113IPR001471AP2/ERF domain
PRINTSPR003677.1E-64556IPR001471AP2/ERF domain
PRINTSPR003677.1E-689109IPR001471AP2/ERF domain
CDDcd000182.68E-12139181No hitNo description
SuperFamilySSF541712.09E-7139184IPR016177DNA-binding domain
PfamPF008476.2E-6139181IPR001471AP2/ERF domain
PROSITE profilePS5103210.441140181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-6140182IPR001471AP2/ERF domain
SMARTSM003804.2E-5140198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAKLSQQNTK NTAINRNNAT NGVTKVKRKR RSVPRDSPPQ RSSIYRGVTR HRWTGRHEVH  60
LWDKNCWNES QNKKGRQGAY DDEEVAAHAY DLAALKYWGP ETILNFPLST YQNQLKEMEG  120
KSREEYIGSL RRKSNRGVSK YRGVSRHHHN GGWEARIGRV FGNKYLYLGT LAPQEEAAAA  180
YGIEHRGGLN ADLSRYIKWL KPNQNNSNGS NDLNLPNPMI IGTDNSTHPN PTQELGPTFP  240
HNEQTYQPSE TTLIPLRPAA ANPTSALGLL LQSSKFKEMM EMTAVTDCPP TSSSELELTP  300
SSFPEDVQTY FDCQYSSSYG DQGDDMIFGD YNSFMLPMFH SDF
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018218.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN48e-94AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2K2A4240.0A0A2K2A424_POPTR; Uncharacterized protein
STRINGPOPTR_0006s19360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.13e-91ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]