PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030147.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YC
Protein Properties Length: 258aa    MW: 28795.5 Da    PI: 5.5379
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030147.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.66e-56791821101
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdi
  CCG030147.1  79 QLQTFWANQyqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPIIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 176
                  89******9999************************************************************************************** PP

        NF-YC  96 vprdel 101
                  vpr++l
  CCG030147.1 177 VPREDL 182
                  ***987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.68E-3366173IPR009072Histone-fold
PfamPF008083.1E-21101164IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.4E-37102179IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDQQGHVQPP AGGMVGSTAP VPYGIPSYQH NQMMGPSATG SLQSPTQPAV LTASSAQLAQ  60
HQLAYQHIHQ QQQQQLQQQL QTFWANQYQE IEQTTDFKNH SLPLARIKKI MKADEDVRMI  120
SAEAPIIFAR ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRE  180
DLKDEVLASV PRGSLPVGGP ADALPYYYMP PQLAPQVSAP GMTVGTPVVD QAIYGQQSRP  240
YVPQQIWQQQ TQQPPEDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-42651794119HapE
4g92_C3e-42651794119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157RRTLQKN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2158490.0AC215849.1 Populus trichocarpa clone POP023-L07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010746.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
SwissprotQ8L4B22e-83NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLU5G1091e-156U5G109_POPTR; Uncharacterized protein
STRINGPOPTR_0010s03730.11e-155(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.41e-81nuclear factor Y, subunit C9