PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030129.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 601aa    MW: 66010 Da    PI: 8.6549
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030129.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-05116138123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F r  nL+ H r H
  CCG030129.1 116 FVCEICNKGFQRDQNLQLHRRGH 138
                  89*******************88 PP

2zf-C2H215.35.6e-05192214123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H++t+
  CCG030129.1 192 WKCDKCSKKYAVQSDWKAHQKTC 214
                  58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-5115138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.05E-8115138No hitNo description
PROSITE profilePS5015710.949116138IPR007087Zinc finger, C2H2
SMARTSM003550.017116138IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
SMARTSM0035598157187IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.2E-5180213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.05E-8187213No hitNo description
SMARTSM0035594192212IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MSNITGDEGS FSSGNTGEEV QQLQGKQQQQ ARNHLHGSDS VAATNSNGST SQQPVKKKRN  60
LPGTPGKSNH LTIINYSFGE KSELKLLINW SNFYESDPTA EVVALSPTTL MATNRFVCEI  120
CNKGFQRDQN LQLHRRGHNL PWKLRQRATT EVRKKVYICP EPTCVHHNPA RALGDLTGIK  180
KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH QKTCGTREYK CDCGTIFSRR DSFITHRAFC  240
DALAEENNKV NQGVMANMGS NLQNQMPELM SSMPLSASTS TSIGIPDFNC FDPKNPLKSL  300
PQELVPNPFK SMNMAGGMFS SSSGTLFGSP RSISSTSSLQ LSSNGSSGLH YLQDNKNGCQ  360
ISATAHMSAT ALLQKAAQMG ATASNSINSP MMQKSFASSM AGPDQLSSIR STTYGGIQQH  420
NTSYDDLPPQ ASDQTSMAGM INGVGGFTNQ PLQRGPQEMS QIFDTAGTGS SAMNDMAMFA  480
SMFMSNDQNP GFIKNMEQED SGNSGLMHGR NGLMERNPTG PSRFAGTPIE GGDMMTRDFM  540
GIGGARPTNF QDQQQQHHQP RLEMEAMSQQ QRMPLMNPYH HQQQPSLREP AMEKPSSIWD  600
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33188251366Zinc finger protein JACKDAW
5b3h_F1e-33188251366Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142154KLRQRATTEVRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010712.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9SCQ61e-107IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A3N7FC770.0A0A3N7FC77_POPTR; Uncharacterized protein
STRINGPOPTR_0002s20950.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.16e-93C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]