PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029921.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 431aa    MW: 47960.8 Da    PI: 8.5252
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029921.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.2e-05384403323
                  ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                  C+ CgksF r++ L++H++++
  CCG029921.1 384 CSRCGKSF-RPEKLHSHMKSC 403
                  ********.**********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF061366.0E-4422312IPR010369Protein of unknown function DUF966
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEASSGIPLQ SGSGAGGEVR RIHIIYFLSH NLGRFEHPHL IRVHHFNLNG VYLRDVKRWL  60
ADLRGKDMPK AFAWSYKRRY KNGYVWQDLL DDDLITPISD NEYVLKGSEI FTPPANPFVG  120
SAYGEKKAAD LLMKSENDSQ VENTEVENRA QDHEQLPSPN QICDDTTPRK TTSSEISQES  180
PVFSSEISTV TDDSIKEEED ACKPNDPLEE EQIDIKVEHS SFYTNFLGSK SKKNQKKRID  240
NNGNIEKMGT PSSFSWLSSS TSSSSQATFA KSKSYSSGTS KMLRNLMTCG AVDTNDAALV  300
RQDQKCNSKY KPIEKPADQI CEGQVLGGPA RVFATSWDQQ IQQHDIANAR KSYDEVRGSK  360
KQPGGFGSPK VIPPAYKPVA APICSRCGKS FRPEKLHSHM KSCRGLKTLT KAASAYVEKT  420
PSPSHISVFK I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041982.10.0PREDICTED: protein UPSTREAM OF FLC-like isoform X2
TrEMBLA0A2K1Z1N70.0A0A2K1Z1N7_POPTR; Uncharacterized protein
TrEMBLA0A3N7GXT50.0A0A3N7GXT5_POPTR; Uncharacterized protein
STRINGPOPTR_0009s02980.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83781620