PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029172.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 459aa    MW: 49890.1 Da    PI: 8.7285
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029172.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.39.8e-1980163186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W+++ + +L+ea++e+ ++l+rg+l++ +Weev+++++erg   ++s +qCk+k++nl+kryk + ++ ++  s   s++ +f+++e
  CCG029172.1  80 EWSDSAISCLLEAYTEKYNQLNRGNLRGRDWEEVAEVVSERGGsnKKSVEQCKNKIDNLKKRYKVELQRISG--S--GSSWHWFKHIE 163
                  5*************************************777654577*****************98888776..3..456*****998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2378165No hitNo description
Gene3DG3DSA:3.40.1160.105.4E-71218452IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.577221453IPR015963Uridylate kinase, bacteria
SuperFamilySSF536333.93E-56222452IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042549.06E-114224453No hitNo description
PfamPF006964.8E-24225432IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MANDDFPLIG EPPPHPPTRH PYSTSVTTTG DYYYSDHDKS AATPSSKRNQ QNHYYYNNKR  60
LKSNSITKIE SCDYRKDREE WSDSAISCLL EAYTEKYNQL NRGNLRGRDW EEVAEVVSER  120
GGSNKKSVEQ CKNKIDNLKK RYKVELQRIS GSGSSWHWFK HIEAIMGNAC NGKSGGSGES  180
DGGGGGGSGG NVNAVVKQVK RYTSGSAAFA NSLKTKPVPN SKWRRVVFKI SGSALAGNCQ  240
NIDPKVAMQI AREVATASRG GLEIAIVLGG RNFFCGDSWI SATGLERPTA YQISMMATVM  300
NSILLQSALE KHGVQARVQS PFAMPELAEP YSRQRAIRHL EKGRVVIFGG AGAGNPLFTT  360
DTAAALRASE INADALLKGT NVDGVYDHHA GNSNAILDHI SFREVVSRGV TLVDMMAMTC  420
CEENGIPVVI FNLLEPGNIS RAFCGDQVGT LIDQAGRIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A5e-6622145248279Uridylate kinase
3nwy_B5e-6622145248279Uridylate kinase
3nwy_C5e-6622145248279Uridylate kinase
3nwy_D5e-6622145248279Uridylate kinase
3nwy_E5e-6622145248279Uridylate kinase
3nwy_F5e-6622145248279Uridylate kinase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010401.10.0PREDICTED: uncharacterized protein LOC105115258
TrEMBLB9HL480.0B9HL48_POPTR; Uncharacterized protein
STRINGPOPTR_0008s02730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-161Trihelix family protein