PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028666.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 353aa    MW: 39993.9 Da    PI: 10.228
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028666.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.7e-30286343359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D+y+W KYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  CCG028666.1 286 DEYSWAKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERCLEDPSMLIVTYEGEHNHS 343
                  9*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.7E-17237281IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.7E-32272343IPR003657WRKY domain
PROSITE profilePS5081128.449279345IPR003657WRKY domain
SuperFamilySSF1182905.62E-26282343IPR003657WRKY domain
SMARTSM007742.3E-36284344IPR003657WRKY domain
PfamPF031064.6E-26286342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEEVEEVHKA AIESCNRVIG LLCQEKDQVQ GRNLMVETRE TVFKFKRFIS LLSTGLGHGR  60
VRKMKKLRPS LPQNIFLDSP NCNTILSPKP LQMVPPNFLE TPLTDIDAKS KPSIQISQKM  120
LLENPVLELN SNIRPPVQIM QTKPPQNFQL LQQHRQIQRM HFQQLQQMNY QADRVYSRSN  180
GGINLKFDGS TCTPTMSSTR SFMSSLSMDG AVSNFDGDSF HLIGMPHSSD HISQQTRRRC  240
SGRGEDGNAK CSSSGRCHCS KRRKLRVKRS IKVPAISNKV AHIPPDEYSW AKYGQKPIKG  300
SPHPRGYYKC SSLRGCPARK HVERCLEDPS MLIVTYEGEH NHSRLISSQS AHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-182863421671WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774450.0GQ377445.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038553.10.0PREDICTED: probable WRKY transcription factor 74
SwissprotQ9SR071e-123WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLA0A2K1Y0T80.0A0A2K1Y0T8_POPTR; Uncharacterized protein
STRINGPOPTR_0013s03990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-116WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]