PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028420.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 400aa    MW: 45949.4 Da    PI: 7.4709
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028420.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1264.1e-391272813135
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec.....eaesssssa 82 
                   kkdrhski T++g+RdRR+Rls+++a++fFdLqd+L fdk+skt+eWLl+qa ++ik+l +              s+ss sec             +
  CCG028420.1 127 SKKDRHSKINTAQGPRDRRMRLSLKVAREFFDLQDKLRFDKASKTVEWLLTQARTEIKKLSSGfpvmnyscsvgtkSASSTSECevlseI-----HID 219
                  69*************************************************************999999999977655555667444331.....333 PP

          TCP  83 snsssg...........kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                  s+ + +           k+++ +   ++s+  +a  + +akesr++ar+rarert+ek r +++
  CCG028420.1 220 STLKVRsvskgksslcvKKERRTSRASSSR--KAPLNPFAKESRERARERARERTKEKLRSRSR 281
                  322221444455556554444443333333..444489999*****************998865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.3E-42127277IPR005333Transcription factor, TCP
PROSITE profilePS5136933.281128186IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.733258275IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MFPLSNNGND PMSYNDQQAY SMPFFSDIIS NSKQYVPPPL SFCHLPSPFF AYDQLELEDH  60
SIFLQQNYDL LLHQQPLRTA ATSTTPSQST VVNNMVDYNK NDVIEITEIC NKQSNSSNDQ  120
IPRKRSSKKD RHSKINTAQG PRDRRMRLSL KVAREFFDLQ DKLRFDKASK TVEWLLTQAR  180
TEIKKLSSGF PVMNYSCSVG TKSASSTSEC EVLSEIHIDS TLKVRSVSKG KSSLCVKKER  240
RTSRASSSRK APLNPFAKES RERARERARE RTKEKLRSRS RSLNESKLCE LEAVNDEFNQ  300
FAGCWSPFET DDQESGTRNI NPSLEVQMAE AEVPFYQEQE QLDTREGMID ETLANMGKWS  360
PSLPTHLHKN GIPQENQFTD FQYPLYKTWD HEAYNIDGMC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260272RERARERARERTK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010148.10.0PREDICTED: transcription factor TCP12-like
TrEMBLB9IDZ90.0B9IDZ9_POPTR; Uncharacterized protein
STRINGPOPTR_0015s03140.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-20TCP domain protein 12