PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028251.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 231aa    MW: 25236.3 Da    PI: 6.1228
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028251.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.11.4e-2841081100
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C++lr++C +dC + p++     p++q++++ +++k++G++ +++l++a +++ r+++++sl+yeA+ r+ +Pv+G+vg+++++++q +q+++e
  CCG028251.1   4 SCNGCRILRKGCGDDCSIKPCLqwietPDSQANATLFLAKFYGRAGLMNLINAGSQHLRPATFKSLLYEACGRIVNPVSGSVGLLSTGSWQQCQAAVE 101
                  6************************************************************************************************* PP

       DUF260  94 lallkee 100
                  ++l +e+
  CCG028251.1 102 AVLKGEP 108
                  9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.4263109IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-234103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MRMSCNGCRI LRKGCGDDCS IKPCLQWIET PDSQANATLF LAKFYGRAGL MNLINAGSQH  60
LRPATFKSLL YEACGRIVNP VSGSVGLLST GSWQQCQAAV EAVLKGEPIT QTASTDQLTV  120
GASDTRHVSR EVDWCASDQP RKVKSKRQFN RSTSKRKSSR TESEHTCFEF MIGFDGSRSV  180
SPDSVLSWRP SLGSDNEETD SMGSVETVEA SKLDEPAEGT DLDLDLTLGH Y
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005502.11e-172PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9M8868e-66LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2K1Y9E01e-158A0A2K1Y9E0_POPTR; Uncharacterized protein
STRINGPOPTR_0012s05340.11e-160(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-60LOB domain-containing protein 41