PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028122.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 407aa    MW: 46273.9 Da    PI: 8.9358
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028122.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.99e-1425111698
                  ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  + ++ l+ + l +pkkf++++g +   s   tl+ + gr + v+l  +k  gr ++ kGW eFv+   +++g f+vF ++g+s+f  +v++f+
  CCG028122.1  25 MVASILQDKKLKIPKKFVNKYGDE--LSSVATLTVPCGRIYLVEL--QKVNGRLWFHKGWHEFVECYSIRVGYFLVFIYEGKSNF--NVHMFD 111
                  4455566677***********865..7779***************..9999*****************************99999..888876 PP

2B362.56.8e-20301394198
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  f  +l ps+v +  +l +p +fa+++ + + ++   +tl+ ++g++W v++  + k+g+  l++GW eFv +n+L+egD+++F+l++ +e  l+v vf
  CCG028122.1 301 FRVILRPSYVYRGFLLHIPSSFARTFlNTV-TG--FVTLQVSDGKQWPVRC--SFKDGKAKLGQGWTEFVWENNLEEGDVCIFELIHAKEIVLKVAVF 393
                  667899*****************9994333.33..599999**********..66666677*************************999998999998 PP

                  - CS
           B3  98 r 98 
                  r
  CCG028122.1 394 R 394
                  7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-2217112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-2218111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.94220113IPR003340B3 DNA binding domain
CDDcd100171.26E-1720111No hitNo description
SMARTSM010191.6E-1221113IPR003340B3 DNA binding domain
PfamPF023621.1E-1024111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-26293394IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-25294394IPR015300DNA-binding pseudobarrel domain
CDDcd100172.22E-23299394No hitNo description
SMARTSM010191.5E-18301396IPR003340B3 DNA binding domain
PfamPF023622.1E-18301394IPR003340B3 DNA binding domain
PROSITE profilePS5086315.185301396IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MSQAAVKPDG SDPPARKSCM FYKLMVASIL QDKKLKIPKK FVNKYGDELS SVATLTVPCG  60
RIYLVELQKV NGRLWFHKGW HEFVECYSIR VGYFLVFIYE GKSNFNVHMF DLTVSEIKNP  120
CSSLSQLQES SHDNPCLLPH EKDDGLEKIL GFRPPSPNVL SSITSKNCNE YIHCSWIQST  180
STASLEKPHV RTDAYNMRET FQSSRDIGTQ FNGMELTSTE DGAGSIIPGI TRKTRGRKRM  240
SENIEDVDKN ESLGIQNVKL KSTHVRNTSE ALTRRRRAVT PEEKERTIRA AHMFRSDNPF  300
FRVILRPSYV YRGFLLHIPS SFARTFLNTV TGFVTLQVSD GKQWPVRCSF KDGKAKLGQG  360
WTEFVWENNL EEGDVCIFEL IHAKEIVLKV AVFRVLEDAA PTCQLAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-4727039718144B3 domain-containing transcription factor VRN1
4i1k_B6e-4727039718144B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454806.10.0B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A2K2AUS20.0A0A2K2AUS2_POPTR; Uncharacterized protein
STRINGcassava4.1_033218m1e-132(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-84B3 family protein