PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027963.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 212aa    MW: 23290.6 Da    PI: 8.3349
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027963.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.84.3e-3912111199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+k+C++apyf  +q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA  r+rdPv+G+vg+i++lqqq+++l+aela++
  CCG027963.1  12 PCGACKFLRRKCVKGCIFAPYFDPDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALTRVRDPVHGCVGHIFTLQQQVMNLQAELAYI 109
                  7*********************777769*******************************************************************998 PP

       DUF260  98 ke 99 
                  ++
  CCG027963.1 110 QA 111
                  76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.03611113IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-3812110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MMNGSPNNGS GPCGACKFLR RKCVKGCIFA PYFDPDQGTA HFAAVHKVFG ASNASKLLLR  60
IPAHKRLDAV VTLCYEALTR VRDPVHGCVG HIFTLQQQVM NLQAELAYIQ AYLSTLQCLP  120
LRQQPPLCAQ RHSLMSLSSS SEVPSFSKLA SNSNISMHFD QLQLQPQQAS TESTGFYNPS  180
EDGIDNEDLH ELARAFASRC LPGVRFRPPN SP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017497.11e-158PREDICTED: LOB domain-containing protein 19-like isoform X1
SwissprotO813224e-72LBD31_ARATH; LOB domain-containing protein 31
TrEMBLB9GPH31e-134B9GPH3_POPTR; Uncharacterized protein
STRINGPOPTR_0014s06580.11e-104(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.15e-60LOB domain-containing protein 19