PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027654.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 269aa    MW: 30038 Da    PI: 6.8779
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027654.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13.2e-18124178256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tkeq  +Le+ F+ +++++ +++  LA++l+L  rqV vWFqNrRa+ k
  CCG027654.1 124 RKKLRLTKEQSVILEDNFKDHSTLNPKQKLVLAEQLNLRPRQVEVWFQNRRARSK 178
                  78889************************************************98 PP

2HD-ZIP_I/II119.32e-38124212190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl+keq+ +LE++F+ +++L+p++K  la++L+l+prqv+vWFqnrRAR k+kq+E+d+e Lk+++++l+ en+rL+ke +eL+ +
  CCG027654.1 124 RKKLRLTKEQSVILEDNFKDHSTLNPKQKLVLAEQLNLRPRQVEVWFQNRRARSKLKQTEVDCELLKKCCETLTLENKRLQKELQELK-S 212
                  69*************************************************************************************9.4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.649120180IPR001356Homeobox domain
SMARTSM003893.3E-16122184IPR001356Homeobox domain
SuperFamilySSF466894.71E-18122188IPR009057Homeodomain-like
CDDcd000861.44E-15123181No hitNo description
PfamPF000461.0E-15124178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.2E-17124178IPR009057Homeodomain-like
PROSITE patternPS000270155178IPR017970Homeobox, conserved site
SMARTSM003406.9E-21180223IPR003106Leucine zipper, homeobox-associated
PfamPF021833.0E-8180213IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MMGFGTTDDL CNTGLGLGLG SFHTEQENCS QSHHLFQPIR KDKLALKYDL LLPSLTLGPS  60
EDVYRSITKK TDADLQPQAS SLSAVSSFSN SSIKKEREFG IGEEVDVERV SSRLSDEDEE  120
GSPRKKLRLT KEQSVILEDN FKDHSTLNPK QKLVLAEQLN LRPRQVEVWF QNRRARSKLK  180
QTEVDCELLK KCCETLTLEN KRLQKELQEL KSLKLASPVY MQLPAATLTM CPSCERICSG  240
SDQGSSASTF TVGPKPNFYN PDTNSSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172180RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017057.10.0PREDICTED: homeobox-leucine zipper protein HAT22
SwissprotP466042e-83HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLB9GNK21e-180B9GNK2_POPTR; HD-ZIP family protein
STRINGPOPTR_0002s11410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-68HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]