PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 508aa    MW: 54472.6 Da    PI: 9.333
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027410.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-056991123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  +L+ H r H
  CCG027410.1 69 FVCEICNKGFQRDQDLQLHRRGH 91
                 89******************988 PP

2zf-C2H215.74.2e-05145167123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC+ C+k +  +s+ k H++t+
  CCG027410.1 145 WKCERCSKKYAVQSDWKAHMKTC 167
                  58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.73E-66891No hitNo description
Gene3DG3DSA:3.30.160.602.3E-46891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0186991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7836991IPR007087Zinc finger, C2H2
PfamPF121716.9E-56991IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM00355100110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-5133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.73E-6140166No hitNo description
SMARTSM0035577145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MADVENSLRM KVSTASGEDT IVSSFGNQGM PLSVTVPQPK KKRNLPGMPD PDAEVVALSP  60
KSLLATNRFV CEICNKGFQR DQDLQLHRRG HNFPWKLKQR TNKEPRKRVY VCPEPSCVHH  120
NPVRALGDLT GIKKHFSRKH GEKKWKCERC SKKYAVQSDW KAHMKTCGAR EYKCDCGTLF  180
SRRDSFITHR AFCDALTEES ARAQTLAITG NEGNGCDVKC VVASPPPPPL TPSTSVVSPG  240
LSVQSSELAE NSIRFSPPTP AAICLHDSST STSSASSTSN VFASKLASST ASLTAIPRQA  300
SLSPFPMFCG LAHSDCPPTM PTPKAMDPPS QTLSPSIYLP NPTSSLFPTN QDRRHYTPSP  360
QPAMSATALL KKAAQMGATT SNPSFLRGLG FPPSTNQDGN GNKWDMKPEN NTTFSAGLGL  420
VLPTSDIMMN SSSLFGKKPT TLDLLGLGLD AASSALLNYN GSDGFNVAAA AAAAYGGGRR  480
GNSEETWDGS HNNKVPERKP NGSTATSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-36141207369Zinc finger protein JACKDAW
5b3h_F1e-36141207369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040764.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9LVQ71e-132IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLB9IBT20.0B9IBT2_POPTR; Uncharacterized protein
STRINGPOPTR_0014s17900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-110indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]