PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027244.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 1167aa    MW: 125248 Da    PI: 4.2509
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027244.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-056284123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C++Cg +F++++   rH r H
  CCG027244.1 62 YVCHKCGWPFPNPHPSARHRRAH 84
                 9*******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.8296284IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1167 aa     Download sequence    Send to blast
MTEGRMAGAC AVNHVVTVSH CVPYCMSTQT YTLSFSSSWK MDNQDPRKNP THTPGHESHG  60
VYVCHKCGWP FPNPHPSARH RRAHKKICGT LEGYKFVDSE ETPLSALSDD DRGSDEDPKT  120
PSPKGLERGI NERGTGGVGS RSNRSEDDVF TDAIAEFPES GSSPVTGEHI RDVKEPGINL  180
EINKATAQSS EDGSITVISP PPSNSADHIQ MQSTEVPVTN LPGSAQESSL DHGSNATIAS  240
TTRSLTDCRG EESDFEHSHD NGSSAWDSIP IKPETQTDAS QENKKSGTVE DLPDTDAKGN  300
EETKLDKQLL DVVVSTDDNA EDASEVASES QKMEDVTSQP VPAAEVLQLK EGGYTDDLAS  360
GMSLNDLSPE VNLVEPAHSS ISTAQIEGDT QEIDSAVYVN SAVSYDNKGE GNGNMHVLIL  420
PNDITVVADA ENMVKGFKDL EGWKLPQPVN MDSFEVSNNV KDSDLENNPQ GFNSKPLTED  480
TKVSASNMHV LNDNLEPKDG TSQHIVEELP DEAEADVAQR SEVSVTDVVT GDLEKSISVH  540
STVEDVPRDH CETSSLTSSV EHATKVISDT NTVVVPMDAE VRRTNLIGMD DTGNDEKDKI  600
ESSEVGENDK NKRNAKESFA ENRIPTSKHA SISSEQADQR NSELGDVKAA GLEEGKIERC  660
NVSEIVTEGD SVSGLGEENL LREPKTTPES AVNVESCFTL ENDINVCEGK LPQLASIPSE  720
QADQRNNVLG DVKSAGLEEG KIERCNVSEI VTEGDSVSGL GEENLLRGPK TTPESAVNVE  780
SCFISENDIN VCEGKLPQHE HTDIGGDLDP QESRKEPESN GMANQQVERA GEVSAAAESD  840
SGGDAEVLWK SSEDKMAREP LVSPSEPSSS LQNSSPVADN LAIDVLGVAS GNTTESLPHE  900
GDNNLVAQQV VASATDFSVD SISQTDSLEG HWGSVSVLST ISDIPAILDA EPLPSNGSQA  960
LSEAEKATLK KPIAASETEH ADKSDIFDPP SFMTLVEPRD VVNQKGASFE SQTTQDPQQP  1020
KAASVQAGWF PSITNVLNES QGRKKNEEII AKVTNWSTGD QCPSLRSPQH APLKSLLGEA  1080
SMETKSKKLN AKEIPVEKDG PAAKDNGALP KTVSSILAPQ EPVGEPAKEE ENAWSSPARY  1140
PADIKREKRK VKGRPYWAQF VCCSSVN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2140971e-124AC214097.1 Populus trichocarpa clone POP027-H14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006103.10.0PREDICTED: uncharacterized protein LOC105112197 isoform X1
TrEMBLA0A2I4KKX10.0A0A2I4KKX1_POPTR; C2H2 family protein
STRINGPOPTR_0014s14320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50511719