PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026656.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 417aa    MW: 44551.2 Da    PI: 7.0355
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026656.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.52.7e-39922045101
          TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............. 88 
                  k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+p+i++ tgt++++a+++  ++s +ss+++ s++             
  CCG026656.1  92 KRPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPSIIATTGTGTIPANFStLNVSLRSSGATISAPasksaplsfhsgl 189
                  899***************************************************************99987777777777444434444455555555 PP

          TCP  89 ........kaaksaakskksq 101
                          +      +++++ 
  CCG026656.1 190 afydandaS------ETRRAM 204
                  553333220......222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-3795259IPR005333Transcription factor, TCP
PROSITE profilePS5136927.66795149IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MELMESQRNT RNQQRNSGAD EDRHGQKEES VAASLQLVVP LGSQSSQLQQ QHGSTSTTTT  60
TQGPFMGSIS SQIGVHPSTS TSNSTITKST IKRPSKDRHT KVDGRGRRIR MPAMCAARVF  120
QLTRELGHKS DGETIEWLLQ QAEPSIIATT GTGTIPANFS TLNVSLRSSG ATISAPASKS  180
APLSFHSGLA FYDANDASET RRAMASNPHM LGFHHQLYPQ NLVSDDNYMR KTFREDLFKE  240
TTQQQSTETI EASNSAKSRT GVQDQETAGS IRPATNILPT PMWAVAPAAT TNGGNTFWML  300
PVGGGATPAA AVTEPQMWTF PTAGAAAGVT SMQRVNFGGS SRVSNPVQLG SMIVQQQVGA  360
NQQLGLGLSE SNMGMIFGGV NAYSSSRVGL GMDLEQNNQE KQPQGSDSGD ENPNDSQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2156260.0AC215626.1 Populus trichocarpa clone POP014-A12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004002.10.0PREDICTED: transcription factor TCP23-like
SwissprotQ9LQF02e-77TCP23_ARATH; Transcription factor TCP23
TrEMBLA0A2I4KKM30.0A0A2I4KKM3_POPTR; TCP family protein
STRINGPOPTR_0013s11510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.14e-68TCP family protein