PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026648.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 353aa    MW: 41141.9 Da    PI: 8.8713
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026648.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.65.6e-076586223
                 EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 +C++Cg sF+ + +L++H+++H
  CCG026648.1 65 TCEKCGASFKKPAYLVQHMQSH 86
                 6*******************99 PP

2zf-C2H213.90.0001692116123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  + C+  dC+ s++rk++L+rH+  H
  CCG026648.1  92 FMCSvdDCHASYRRKDHLTRHLLHH 116
                  789999***************9987 PP

3zf-C2H218.65.1e-06121146123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                  +kC+  +C+  F  +snLkrH r  H
  CCG026648.1 121 FKCEigNCDHKFVYPSNLKRHVRElH 146
                  89*********************988 PP

4zf-C2H218.65e-06161185123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  y C+   Cgk F+ +s L++H  +H
  CCG026648.1 161 YACQepGCGKAFRYPSKLRKHEDSH 185
                  789999***************9888 PP

5zf-C2H213.40.00024255277223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                   C+ C  +Fs+k nL++H +  H
  CCG026648.1 255 HCKGCQHTFSTKTNLNQHVKAvH 277
                  588***************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.8082047IPR007087Zinc finger, C2H2
SMARTSM00355242042IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-66485IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.0696491IPR007087Zinc finger, C2H2
SMARTSM003550.0076486IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SuperFamilySSF576671.64E-1072124No hitNo description
Gene3DG3DSA:3.30.160.608.3E-1186116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.51592121IPR007087Zinc finger, C2H2
SMARTSM003550.1792116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094116IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-5117143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.49E-8119185No hitNo description
PROSITE profilePS5015712.092121151IPR007087Zinc finger, C2H2
SMARTSM003550.0024121146IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123146IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-10157185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.759161190IPR007087Zinc finger, C2H2
SMARTSM003550.004161185IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280163185IPR007087Zinc finger, C2H2
SMARTSM003558.5193218IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280195218IPR007087Zinc finger, C2H2
SMARTSM0035518221242IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.16E-7234289No hitNo description
PROSITE profilePS5015711.884252282IPR007087Zinc finger, C2H2
SMARTSM003550.079252277IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-4253278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280254277IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.8E-5279305IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.7283309IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280285309IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEEEAAEKGR AVIFRDIRRY YCDYCGICRS KKSLITSHVL THHKEEIEKE RVDGDEVKEG  60
VKSNTCEKCG ASFKKPAYLV QHMQSHSLER PFMCSVDDCH ASYRRKDHLT RHLLHHEGKL  120
FKCEIGNCDH KFVYPSNLKR HVRELHDESS PSDRVGGEKQ YACQEPGCGK AFRYPSKLRK  180
HEDSHVNLDS IEAMCIEPDC MKHFSNKKCL KAHVQFCHQY INCDICGTKQ LRKNIKRHLR  240
THEPVSGSTE RIKCHCKGCQ HTFSTKTNLN QHVKAVHLEQ RPFVCGFPGC DMRFSYKHVR  300
DNHEKSGLHV YTPGDFVESD QQFRSRPRGG RKRKFPTVEM LIRKRVTPPT EFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A1e-145224210184Aart
2i13_B1e-145224210184Aart
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325333RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003995.10.0PREDICTED: transcription factor IIIA
SwissprotQ84MZ41e-142TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2K1WRF60.0A0A2K1WRF6_POPTR; Uncharacterized protein
STRINGPOPTR_0013s11300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-145transcription factor IIIA