PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026357.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 414aa    MW: 43842.4 Da    PI: 8.271
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026357.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.75.7e-4087214389
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 
                  + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s +ss+++ s++           
  CCG026357.1  87 TTKRPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNVSLRSSGATISAPasksaplsfhg 184
                  6899****************************************************************999877777777774444444455566666 PP

          TCP  89 .............................k 89 
                                                
  CCG026357.1 185 glafydannasetrravasnppmlgfhhqL 214
                  666655444444444444444444444440 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-3892261IPR005333Transcription factor, TCP
PROSITE profilePS5136928.08592146IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MESQRNTANQ QSNSSGSKDQ YHGQKQESVA ASLQLVPLES RPSQLQQQHG STTTTPTSQG  60
PSMGSISSQI GTHPSTSTSN SAVTKSTTKR PSKDRHTKVD GRGRRIRMPA MCAARVFQLT  120
RELGHKSDGE TIEWLLQQAE PAIIATTGTG TIPANFSTLN VSLRSSGATI SAPASKSAPL  180
SFHGGLAFYD ANNASETRRA VASNPPMLGF HHQLYPQNLV SDDNYMRKTF REDLFKETTQ  240
QQSTETIEAS NSAKSRAGVQ DQETAGSIRP ATNMLPTPMW AVAPAATTNG GNTFWMLPVG  300
GGATPTASVQ EPQMWTFPAA AAGVPSMQRV NFGGGGGGRV SSPVQLGSMI VQQQVGANQQ  360
LGLGISESNM GMILGGVSPY SSCRVGLGMN LEHHNQDNQP QGSESGDENP NDSQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2156260.0AC215626.1 Populus trichocarpa clone POP014-A12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009347.10.0PREDICTED: transcription factor TCP23-like
SwissprotQ9LQF02e-80TCP23_ARATH; Transcription factor TCP23
TrEMBLA0A2I4KK620.0A0A2I4KK62_POPTR; TCP family protein
STRINGPOPTR_0013s11510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.11e-69TCP family protein