PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 150aa    MW: 17136.6 Da    PI: 7.9168
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026290.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.31.1e-3051231128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat.gk.dkevlsk. 95 
                  lppGfrF P+deelvv++L++k++  +++  +vi+++d++ ++Pw+L+ k+ +e k++yf+s+r         +nr+t++g Wk   g+ ++++l++ 
  CCG026290.1   5 LPPGFRFCPSDEELVVHFLHRKAALLPCHP-DVIPDLDLHPYDPWELDGKALSEGKQCYFYSRRT--------QNRITSNGCWKPMvGHvEEPILASe 93 
                  79*************************999.99**************977778899******984........589********65144577888776 PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++lvg+kk ++fy   a +g kt+W+m+ey l
  CCG026290.1  94 NNKLVGIKKYFIFY---AAEGIKTNWIMEEYLL 123
                  8888**********...899***********76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-373130IPR003441NAC domain
PROSITE profilePS5100531.935146IPR003441NAC domain
PfamPF023659.6E-206122IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MAANLPPGFR FCPSDEELVV HFLHRKAALL PCHPDVIPDL DLHPYDPWEL DGKALSEGKQ  60
CYFYSRRTQN RITSNGCWKP MVGHVEEPIL ASENNKLVGI KKYFIFYAAE GIKTNWIMEE  120
YLLSEHCTSH GSSPSTKSSK TRARSKQVRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-28413319155NAC domain-containing protein 19
3swm_B1e-28413319155NAC domain-containing protein 19
3swm_C1e-28413319155NAC domain-containing protein 19
3swm_D1e-28413319155NAC domain-containing protein 19
3swp_A1e-28413319155NAC domain-containing protein 19
3swp_B1e-28413319155NAC domain-containing protein 19
3swp_C1e-28413319155NAC domain-containing protein 19
3swp_D1e-28413319155NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707960.0AB970796.1 Populus tremula x Populus tremuloides PtxtNAC161 mRNA for NAC transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004987.11e-108PREDICTED: NAC transcription factor ONAC010
SwissprotQ8GWK67e-55NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0E4FJJ71e-101A0A0E4FJJ7_POPPZ; NAC transcriptional factor
STRINGPOPTR_0003s01720.17e-96(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.19e-57xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]