PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025536.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 284aa    MW: 31155.2 Da    PI: 5.4438
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025536.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.6e-1878128155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta++Aa a+++a+++++g
  CCG025536.1  78 CNYRGVRQRT-WGKWVAEIREP---N-RgPRLWLGTFPTAYDAALAYDEAARAMYG 128
                  56*****999.**********8...2.35************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.91E-3078138No hitNo description
PfamPF008473.4E-1278128IPR001471AP2/ERF domain
PROSITE profilePS5103221.15379136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-3079137IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-2079137IPR016177DNA-binding domain
SMARTSM003802.0E-3479142IPR001471AP2/ERF domain
PRINTSPR003672.5E-98091IPR001471AP2/ERF domain
PRINTSPR003672.5E-9102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGTLDQDSKA TPMPTDSTKK RKRVSNKSVA ETLKKWKEYN EYIDSQDDGG NRPVRKVPAK  60
GSKKGCMKGK GGPENSVCNY RGVRQRTWGK WVAEIREPNR GPRLWLGTFP TAYDAALAYD  120
EAARAMYGPY ARLNVPDVLN STSSSKDNFS SATPSCYSPA ASSADSATTS THSEVCVYED  180
PKQNVSGQAE VCGKDVSSQA EVLAHHISRQ QHIEDGSQAV ENSTLRDEQK SQSENPLWTP  240
SENSLGTDEW HNYSLDEIFS FDELLGGGID AGMMAAEGYF NLGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1779136260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5674220.0EF567422.1 Populus euphratica DRE-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015329.10.0PREDICTED: dehydration-responsive element-binding protein 2C-like
RefseqXP_011015336.10.0PREDICTED: dehydration-responsive element-binding protein 2C-like
RefseqXP_011035867.10.0PREDICTED: dehydration-responsive element-binding protein 2C-like
RefseqXP_011035869.10.0PREDICTED: dehydration-responsive element-binding protein 2C-like
TrEMBLB2KND80.0B2KND8_POPEU; DRE-binding protein
STRINGPOPTR_0010s19100.11e-177(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.21e-35DRE-binding protein 2A
Publications ? help Back to Top
  1. Chen J,Xia X,Yin W
    A poplar DRE-binding protein gene, PeDREB2L, is involved in regulation of defense response against abiotic stress.
    Gene, 2011. 483(1-2): p. 36-42
    [PMID:21640171]