PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025477.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 520aa    MW: 56414.9 Da    PI: 8.0796
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025477.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.9e-11159183226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C +++ t tCk+Gd+CkF H+
  CCG025477.1 159 GEKDCAHYMLTRTCKFGDTCKFDHP 183
                  7889********************9 PP

2zf-CCCH352.4e-11210236127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C++f++t  CkyG +CkF+H++
  CCG025477.1 210 PGEPDCPYFLKTQRCKYGLNCKFNHPK 236
                  5789*********************96 PP

3zf-CCCH36.67.3e-12258282327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C f+++tG Ck+G++CkF+H++
  CCG025477.1 258 EPQCAFYMKTGKCKFGASCKFHHPK 282
                  678********************96 PP

4zf-CCCH38.51.9e-12336360327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C+f+++tG CkyG++C+++H++
  CCG025477.1 336 EVDCPFYLKTGSCKYGATCRYNHPE 360
                  689********************96 PP

5zf-CCCH42.61e-13416441126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +++++C+f+++tG+Ck+G+rCkF+H+
  CCG025477.1 416 PGQAECDFYMKTGECKFGERCKFHHP 441
                  5789*********************8 PP

6zf-CCCH38.52e-12473494627
                  -SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                  C+++++tG CkyG++CkF H+p
  CCG025477.1 473 CPYYMKTGACKYGATCKFDHPP 494
                  ********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.887157185IPR000571Zinc finger, CCCH-type
SMARTSM003560.001157184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-5158184IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8159183IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.765209237IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-6209236IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-9211236IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5214239IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-5215237IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.478255283IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4255282IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9258282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6259283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5261281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.925333361IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6333360IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-10336360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5337361IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4339360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601415443IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-7415442IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6416444IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-11417441IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5421441IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338467495IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6467494IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-5471494IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-10473494IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5473492IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
METLAMKKIL NNALTGVASA TFIIRNGNGS VADSAPFSKG TGSDPQSSDS SKYSVSSSMY  60
LKQSDTALRY SVDRGIASAA ATSPHLSSWT PPYGVDVPPA VESLVPGLKR TPEVLYHPTL  120
LGAHSTIGQS EDWYSTNSLA KRVRFETTSH FPIYPQRPGE KDCAHYMLTR TCKFGDTCKF  180
DHPVWVPEGG IPDWKEVPLV ATSETFPERP GEPDCPYFLK TQRCKYGLNC KFNHPKEKLS  240
LGDSENSSVS ALPERPSEPQ CAFYMKTGKC KFGASCKFHH PKDIQIPLSG LGNDNGVQTD  300
SVVKNEGITG DVNVINSPVT PALHHNSKGL PIRLGEVDCP FYLKTGSCKY GATCRYNHPE  360
RTAINPPAAA IGHPIVAPSL ANLNFGVFNP AASIYQTIDP RLSMLGVGPT FYPQRPGQAE  420
CDFYMKTGEC KFGERCKFHH PIDRSAPTEK QIQQQTVKLT LAGLPRREGA VHCPYYMKTG  480
ACKYGATCKF DHPPPGEVMA VSTSLDAAVL GAEAGTSQAQ
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014515.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 37
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A3N7FSU10.0A0A3N7FSU1_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18390.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)