PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025352.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 505aa    MW: 55448.6 Da    PI: 8.3088
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025352.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.0005440462123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp C+k+F++   L  H r+H
  CCG025352.1 440 HECPFCPKVFRSGQALGGHKRSH 462
                  78******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.68E-5634No hitNo description
PfamPF139120.0026927IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182936IPR007087Zinc finger, C2H2
SMARTSM003550.37931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.2394116IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.14194121IPR007087Zinc finger, C2H2
SuperFamilySSF576675.46E-895116No hitNo description
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
PfamPF139127.4E-796118IPR007087Zinc finger, C2H2
SuperFamilySSF576675.46E-8435462No hitNo description
PfamPF139128.6E-10440462IPR007087Zinc finger, C2H2
SMARTSM003550.016440462IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39440462IPR007087Zinc finger, C2H2
PROSITE patternPS000280442462IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MEANQKNNFV CKFCNKRYPC GKSLGGHIRI HLNANGTSST DEEAKVQVSK TESNSKQISV  60
SEAVGQPGYV LRDNPKKTSR FVGDSSNTTS LPEKVCKECG KGFQSLKALC GHMACHSKNY  120
FQDQSGTTEK LKEIVSDNQS DSEATDPSKP RRSKRMRYKT IDVYTTSLSL ANAASLSSAS  180
DIEQEQEEVA KCLMMLSKDS GFKGCFSSLA DSSDNNSVVL EGKSSSTKTR INVNNAVDFV  240
SSGIESLEMK KSMQRGLIST ENDQSENSDS GYFRNGPKKV ESDVSVHGFA RNDGIKKYEV  300
EFGSSFDDDI DAESGKRISR FRRVRTRLGK DFIEEDLYDQ ADGASMDSQK RCKNESYEFL  360
SSRRGKCVPL GGRRASHNKT NGCSDSIYES GENSVDTDYV PNPIPNSSRM IQSRSGKTPI  420
EQNSSGNAEK NLGLKKGKLH ECPFCPKVFR SGQALGGHKR SHFAGAARDR TVLIKQDAPE  480
ISMRGLIDLN LPVSVEEEAG GFGPW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012172.10.0PREDICTED: uncharacterized protein LOC105116480
TrEMBLA0A2K1YUV70.0A0A2K1YUV7_POPTR; Uncharacterized protein
STRINGPOPTR_0010s16710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-94C2H2-like zinc finger protein