PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025212.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 182aa    MW: 19811.7 Da    PI: 10.2273
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025212.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000144971123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C++ F ++  L  H++ H
  CCG025212.1 49 FECQYCHRGFANSQALGGHQNAH 71
                 89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.92E-64776No hitNo description
Gene3DG3DSA:3.30.160.602.9E-44775IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.7394976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSASKNTYLG DPQKKPPSST LKVLGFSVKR NQEELPATTP FNIEYIKKFE CQYCHRGFAN  60
SQALGGHQNA HKRERQRAKR ALYFFKDHQH QRIKPAGPII NAHAARSGPL ICASGSRSIK  120
AAGGVARLEC PAKSPSLMMF DHIDPRPLVG PIGAGAISET SLIAEDEGAG VDLHLRLAPL  180
HP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009817.11e-133PREDICTED: zinc finger protein KNUCKLES-like
TrEMBLB9HWW51e-122B9HWW5_POPTR; Uncharacterized protein
STRINGPOPTR_0010s15060.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.14e-16C2H2 family protein