PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 472aa    MW: 52970.1 Da    PI: 9.341
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025130.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP158.53.6e-491042612136
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasnsssg... 88 
                  +gkkdrhskihT++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL++++k+aikelt+t        s +     +a++s+ss+s+   +   
  CCG025130.1 104 TGKKDRHSKIHTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFTKSKAAIKELTDTvpkvrkcsS-T-----SAGKSVSSTSE---Sevv 192
                  79**************************************************************655544421.1.....33333333332...1223 PP

          TCP  89 ....................kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136
                                      ++  s++++kks+k ++ + n+ + esr+kararar+rtrekm++k  +
  CCG025130.1 193 sgikltpdtngdrrvmeaksDSLVSKPQEKKSKKVHKPVFNPVDrESREKARARARDRTREKMKNKGIN 261
                  555566667777888888774444444333333333333555555********************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.1E-48104257IPR005333Transcription factor, TCP
PROSITE profilePS5136938.019106164IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.188237254IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MIASTLADPE NPSSIEDYSP TSFLQHFPDL FLNDDDLLVG ELLSQQQQQQ QQPGVFGSNT  60
HVLAVETQEI NPVASNDEST RKFNNSKMKG NVNTSKQPIR QRRTGKKDRH SKIHTAQGPR  120
DRRMRLSLQI ARKFFDLQDM LGFDKASKTI EWLFTKSKAA IKELTDTVPK VRKCSSTSAG  180
KSVSSTSESE VVSGIKLTPD TNGDRRVMEA KSDSLVSKPQ EKKSKKVHKP VFNPVDRESR  240
EKARARARDR TREKMKNKGI NKSSQSSQAN PDNLEKFGYS STLEYGENLA SGRQEINSSV  300
KVVDEEEESN NHHHLLPHQM DHVSIIDKFF GITNSPRSSS IFDFSESVEV PSGATLKDEF  360
SGFPLKWDVT NGRVQYKYNA LPNMKLPSGN VQAQNPNANF MTTPHALEQN LSTMIMTTLN  420
AHVEESPNSA FMSMPNPNEQ NPISILKTTT AIDNGNQFSS SHIFARDYDR LY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1291920.0GU129192.1 Populus balsamifera TCP transcription factor (TB2) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008633.10.0PREDICTED: transcription factor TCP12-like
TrEMBLA0A2K1YTC70.0A0A2K1YTC7_POPTR; Uncharacterized protein
STRINGPOPTR_0010s14030.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-32TCP domain protein 12