PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025087.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 241aa    MW: 26605.2 Da    PI: 7.3401
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025087.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.27.2e-302103197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C+++p++      ++q++++ +++k++G++ +++l++a+p+  r++++ssl+yeA+ r+ +PvyG+vg+++++++  +q++++
  CCG025087.1   2 SCNGCRVLRKGCNDNCTIRPCLqwiksTDSQANATLFLAKFYGRAGLINLIEAAPQRLRPAIFSSLLYEACGRIVNPVYGSVGMLWSGNWAQCQAAVD 99 
                  6*********************9998777889***************************************************************999 PP

       DUF260  94 lall 97 
                  ++l 
  CCG025087.1 100 AVLK 103
                  8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.1711107IPR004883Lateral organ boundaries, LOB
PfamPF031956.6E-24299IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSCNGCRVLR KGCNDNCTIR PCLQWIKSTD SQANATLFLA KFYGRAGLIN LIEAAPQRLR  60
PAIFSSLLYE ACGRIVNPVY GSVGMLWSGN WAQCQAAVDA VLKGLPIISI PSSDVPAPHL  120
ISSLNTYDIR HVSRDQNSPE LNKVKSRTRY KRFTGTRPNS LAEPTGRLHQ GEMGWEPVRG  180
PWLGHLGNGD SRIKDEDSIF AAETVEDSLW SRVEPDQVFK FNGQGDDSDL SLELTLALVS  240
E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007889.11e-180PREDICTED: LOB domain-containing protein 42
SwissprotQ9CA304e-74LBD42_ARATH; LOB domain-containing protein 42
TrEMBLB9HWH61e-167B9HWH6_POPTR; Uncharacterized protein
STRINGPOPTR_0010s13480.11e-167(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.12e-76LOB domain-containing protein 42