PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024950.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 280aa    MW: 30349 Da    PI: 4.4293
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024950.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00072254277123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++C+ C +sF +   Lk+H +  H
  CCG024950.1 254 FSCKSCERSFGSDGALKSHSQAkH 277
                  89*****************76655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030661.5E-66165No hitNo description
PROSITE profilePS5015711.302254280IPR007087Zinc finger, C2H2
PROSITE patternPS000280256277IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSSMEFWGVE VKAGEPLKVE PKDFYMIHLS QAALGESSKK GNESVPLFLK FDEKKLVLGT  60
LSPDKIPQLS FDLVFEREFE LSHNWKNGSV FFCGYQAAIP ENDDSDFSDD GDEIPFEKVE  120
NVKFATGTDK AAKPEKPKAN PVAPSKDDES DEDDSDDDSD EDDSDDGSEG MSIEEDLDDE  180
SDSEDEETPK KAEQSKKRTN DSAIKTPVSS KKAKTATPQK TDGGKAGQVT PHPAKGKAPS  240
NGNNPKTPKS GGNFSCKSCE RSFGSDGALK SHSQAKHGGK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1446810.0EF144681.1 Populus trichocarpa clone WS01116_O05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005635.10.0PREDICTED: histone deacetylase HDT1-like
SwissprotQ8LJS21e-63HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLA9P9501e-162A9P950_POPTR; C2H2 family protein
STRINGPOPTR_0004s20020.11e-162(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-34histone deacetylase 3