PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024598.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 205aa    MW: 22124.7 Da    PI: 8.1129
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024598.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000342345123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y C+ C++ F++ + L  H + H
  CCG024598.1 23 YICSLCDREFKSGHALSGHYNAH 45
                 89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.7E-52250No hitNo description
PROSITE profilePS5015711.1772350IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MVEKDNDTSS DERTVTSKLR SGYICSLCDR EFKSGHALSG HYNAHSKKRK RKYVPGTVGK  60
VIRVLVPSID VEPPVARKHG SEFTHGAPTP GVQSGVDYET GDESSSTRPQ GGLKKNINLN  120
IETHRSHPCE RDVNDEAPRG GGLLNITTLI HGVKINNGVD MDLARTITNP IVKASGKENG  180
DAKFTSGKNG DEDLDLELRL GLGPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14651KKRKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2843060.0GU284306.1 Populus balsamifera isolate FRE01 haplotype A hypothetical protein gene, partial sequence.
GenBankGU2843070.0GU284307.1 Populus balsamifera isolate FRE01 haplotype B hypothetical protein gene, partial sequence.
GenBankGU2843120.0GU284312.1 Populus balsamifera isolate GIL14 haplotype A hypothetical protein gene, partial sequence.
GenBankGU2843140.0GU284314.1 Populus balsamifera isolate KUU07 haplotype A hypothetical protein gene, partial sequence.
GenBankGU2843160.0GU284316.1 Populus balsamifera isolate RNA13 haplotype A hypothetical protein gene, partial sequence.
GenBankGU2843180.0GU284318.1 Populus balsamifera isolate STO11 haplotype A hypothetical protein gene, partial sequence.
GenBankGU2843220.0GU284322.1 Populus balsamifera isolate LOV02 haplotype A hypothetical protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005305.11e-149PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLB9HA031e-123B9HA03_POPTR; Uncharacterized protein
STRINGPOPTR_0006s20940.11e-124(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1655245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.17e-06zinc finger protein 11