PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024596.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 266aa    MW: 30013.9 Da    PI: 6.4341
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024596.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00063860123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y C  C+k F+++  L  H++ H
  CCG024596.1 38 YICARCSKGFPSSQALGGHQNAH 60
                 89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.22E-63665No hitNo description
PfamPF139127.6E-73762IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.513865IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MVTNLLQGKA NSCESSNARS ITRENLPTLL SLQQPDAYIC ARCSKGFPSS QALGGHQNAH  60
KRERNEERRQ MLEKRGRMML EERSRMMMME EYLSMKEMNC TTPAILSPHP LHAVTPNGED  120
MIPFLIQIPM PNQGNGLIMN PETLLSFHSR NGQTSFMPGS GFDPSLGDKG AYHQISHRFH  180
HEGYEIPYVI PHAIDNNHRP AYPTINKNLN PWELDTNSIT NFDQSVAWMR ESSNAVVAEA  240
STGAFVKGQE TTEVTFNEEL DLNLRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9HA051e-152B9HA05_POPTR; Uncharacterized protein
STRINGPOPTR_0006s20920.11e-153(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1704455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.11e-09C2H2 family protein