PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024429.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 396aa    MW: 41467.6 Da    PI: 5.7829
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024429.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.11.9e-351042052101
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa.ks 97 
                  ++++ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++   ++ +  + +s+++++ ++++ k+
  CCG024429.1 104 TTRRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEEAIIEATGTGTVPAIAVsVGGTLKIPTTTSNNSNSLTETPkKR 201
                  67999***********************************************************8888855532222222222222222222222122 PP

          TCP  98 kksq 101
                  k+++
  CCG024429.1 202 KRPS 205
                  2222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.5E-29109186IPR005333Transcription factor, TCP
PROSITE profilePS5136926.274110164IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MASFQDHGMD PDDEGGTSDL STSAGDPEDN RNSSSICSNG CLKISTIDET EAFQVMPLKE  60
EPFDSDPSSD PDQRTNPMGV VPLAMQMQTP MPVSMPLPVT TTTTTRRAST KDRHTKVEGR  120
GRRIRIPATC AARIFQLTRE LGHKSDGETV RWLLEHAEEA IIEATGTGTV PAIAVSVGGT  180
LKIPTTTSNN SNSLTETPKK RKRPSNSEFC DISEAAPVST SQTSGLAPIK PSAPLAAAAT  240
PQGMVPVFAV GNTGMMVPAN AFWMIPQAAA TAAPANQQIW ALSPSLTPVF NVAAARPVSS  300
FVASTNSGNE TGVNIAAAAS VVNIPSEVEL RSPSPVVAST SVGAKVATKS TMAPSVSSNS  360
GSGKGGKAQM LRDFSLEIYD KQELQLMGRS GNNQPR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197203PKKRKRP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0036881e-82HM003688.1 Passiflora morifolia TCP1 (TCP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029153.10.0PREDICTED: transcription factor TCP9-like
TrEMBLB9GKQ50.0B9GKQ5_POPTR; Uncharacterized protein
STRINGPOPTR_0001s08590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.12e-48TCP family protein