PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023807.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 288aa    MW: 31562.3 Da    PI: 4.5184
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023807.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018262285123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++C+ C++sF +   L++H +  H
  CCG023807.2 262 FSCSSCNRSFGSENALQSHSKAkH 285
                  89*****************88777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.655262288IPR007087Zinc finger, C2H2
SMARTSM003550.0055262285IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280264285IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEFWGVEVKG GEPLRVESGD GFILHLSQAC LGEAKKEKGN ESVCLFVNFD DQKLVLGTLS  60
HEKIPQIPFD LVFEKDFELS HNLKNGKFNS DGEEDLPVPV DNEKKEAKQP KPENENAAKP  120
DSKQKVKIVE PNKDGKPKSE NGDSSDEEDD SSDDGESSDD QAMMMANDED ESSEDEDDES  180
DEDDDDSDDG DVKTPKKTEV GKKRSAESAS KNPVTDKKAK FVTPQKTDLK KTGVHIATPH  240
PSKQAAKTSA NSQRKEQAQK SFSCSSCNRS FGSENALQSH SKAKHSAA
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1458590.0EF145859.1 Populus trichocarpa clone WS0113_M22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018878.11e-171PREDICTED: histone deacetylase HDT1
SwissprotQ6V9I62e-71HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA9PC741e-161A9PC74_POPTR; Uncharacterized protein
STRINGPOPTR_0006s11770.11e-161(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-26histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]