PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023762.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 298aa    MW: 32441.4 Da    PI: 8.974
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023762.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005113135123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+++F++   L  H  +H
  CCG023762.1 113 YQCKTCDRRFPSFQALGGHRASH 135
                  9***********99999998887 PP

2zf-C2H2130.0003195217123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ Cg  Fs+   L  H+r+H
  CCG023762.1 195 HECSVCGAEFSSGQALGGHMRRH 217
                  78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.74E-8112135No hitNo description
PfamPF139122.7E-12112137IPR007087Zinc finger, C2H2
SMARTSM003550.04113135IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.489113140IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SuperFamilySSF576671.74E-8190217No hitNo description
Gene3DG3DSA:3.30.160.606.8E-4193217IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.7E-13194219IPR007087Zinc finger, C2H2
PROSITE profilePS501579.764195217IPR007087Zinc finger, C2H2
SMARTSM003550.012195217IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280197217IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGSKELKQII KGKRTKRPRP SFPLTLAMTS SSSSSAGESG GERDQRICNN SSSSPGPSTS  60
FEFTERTGEE EDMANCLILL AQGNQNCKLA KPVAIAAAAT TTYINRDAGL YVYQCKTCDR  120
RFPSFQALGG HRASHKKPKP GNLDHEDKKV LTTVQMAHEE QNGNRNNINT STTLSLQLVN  180
DRVLCSPKVK SNKVHECSVC GAEFSSGQAL GGHMRRHRAF AAATTTTTTT TATKTTMSLG  240
RVSSPDHESQ ESKKPRNSLQ LDLNLPAPED DLLESKFHFA SKEQVLVLTA SPLVDCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11519KRPRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018810.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLB9IFU21e-124B9IFU2_POPTR; Uncharacterized protein
STRINGPOPTR_0016s10790.11e-124(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-52C2H2 family protein