PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 304aa    MW: 34023.6 Da    PI: 7.3171
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023660.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-18160214256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tkeq   Lee F++++++  +++e LA++l+L  rqV vWFqNrRa+ k
  CCG023660.1 160 RKKLRLTKEQSALLEESFKQHSNLYPKQKEALARQLNLRPRQVEVWFQNRRARTK 214
                  788899***********************************************98 PP

2HD-ZIP_I/II121.35e-39160249191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+keq++lLEesF+++++L p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk++++alk+en rL+ke +eL+ +l
  CCG023660.1 160 RKKLRLTKEQSALLEESFKQHSNLYPKQKEALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEALKDENGRLQKELQELK-AL 249
                  69*************************************************************************************9.55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-17149210IPR009057Homeodomain-like
SuperFamilySSF466892.97E-18150217IPR009057Homeodomain-like
PROSITE profilePS5007117.232156216IPR001356Homeobox domain
SMARTSM003891.5E-14158220IPR001356Homeobox domain
CDDcd000862.19E-16160217No hitNo description
PfamPF000469.9E-16160214IPR001356Homeobox domain
PROSITE patternPS000270191214IPR017970Homeobox, conserved site
SMARTSM003402.9E-23216259IPR003106Leucine zipper, homeobox-associated
PfamPF021834.1E-10216250IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGCLDDGCTT GLVLGLGFAP LTDLERSTSK PGDYSNRLIR PQIKPSLKFD HNPSTSTSFE  60
LSLSLVLSSE TYSHAGSRQK TMDGEKGCEE SIGAHDLLYR QASPDQSAVS SFSSGRVKRE  120
XXXXXXXXXX XERDLGCEDI EVERISSRVS DEDEDGTNAR KKLRLTKEQS ALLEESFKQH  180
SNLYPKQKEA LARQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEFLKKCCE ALKDENGRLQ  240
KELQELKALK LAQPFYMHMP AATLTMCPSC ERIGGVGDGA SKSSFSMVPK PDFYNTFTNP  300
SAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208216RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008397.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466044e-93HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2K2AGX70.0A0A2K2AGX7_POPTR; Uncharacterized protein
STRINGPOPTR_0005s19080.11e-174(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-79HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]