PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023591.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 194aa    MW: 22043.8 Da    PI: 4.584
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023591.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.41.8e-29101271128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGf F+P+deel+ ++L +k++  +++  ++i+++++y  +Pw+L+ ++ ++e++wy+Fs+  +        n+at +g+Wk    +++++s+  g
  CCG023591.1  10 LPPGFIFSPSDEELILHFLDRKASLLPCQP-DIIPDLGLYPQDPWQLEGRALSSENQWYYFSRVME--------NQATGNGFWKPLDIEEPIFSSsAG 98 
                  79*************************999.99***************77778899******9865........56899**************98789 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++vglkk Lv+     p+g++t+W+m+ey+l
  CCG023591.1  99 KKVGLKKYLVYC--IGPEGVETNWMMQEYHL 127
                  99*********9..6899***********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-389155IPR003441NAC domain
PROSITE profilePS5100537.61910156IPR003441NAC domain
PfamPF023654.8E-1811127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGDHGCSGNL PPGFIFSPSD EELILHFLDR KASLLPCQPD IIPDLGLYPQ DPWQLEGRAL  60
SSENQWYYFS RVMENQATGN GFWKPLDIEE PIFSSSAGKK VGLKKYLVYC IGPEGVETNW  120
MMQEYHLCSS KSSGKSYKRK QKLDCSKWIL CRVYQREGSC SRSSNHSDDD GTELSCLDEM  180
FLSMDDLDDI SFPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-32916216171NO APICAL MERISTEM PROTEIN
1ut4_B9e-32916216171NO APICAL MERISTEM PROTEIN
1ut7_A9e-32916216171NO APICAL MERISTEM PROTEIN
1ut7_B9e-32916216171NO APICAL MERISTEM PROTEIN
3swm_A1e-31916219174NAC domain-containing protein 19
3swm_B1e-31916219174NAC domain-containing protein 19
3swm_C1e-31916219174NAC domain-containing protein 19
3swm_D1e-31916219174NAC domain-containing protein 19
3swp_A1e-31916219174NAC domain-containing protein 19
3swp_B1e-31916219174NAC domain-containing protein 19
3swp_C1e-31916219174NAC domain-containing protein 19
3swp_D1e-31916219174NAC domain-containing protein 19
4dul_A9e-32916216171NAC domain-containing protein 19
4dul_B9e-32916216171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2861511e-133GU286151.1 Populus balsamifera isolate NWL07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861521e-133GU286152.1 Populus balsamifera isolate HAY07 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861531e-133GU286153.1 Populus balsamifera isolate HAY07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861541e-133GU286154.1 Populus balsamifera isolate MGR10 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861551e-133GU286155.1 Populus balsamifera isolate MGR10 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861561e-133GU286156.1 Populus balsamifera isolate FRE01 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861571e-133GU286157.1 Populus balsamifera isolate FRE01 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861581e-133GU286158.1 Populus balsamifera isolate KUU07 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861591e-133GU286159.1 Populus balsamifera isolate KUU07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861601e-133GU286160.1 Populus balsamifera isolate STL13 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861611e-133GU286161.1 Populus balsamifera isolate STL13 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861621e-133GU286162.1 Populus balsamifera isolate POR11 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861631e-133GU286163.1 Populus balsamifera isolate POR11 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861641e-133GU286164.1 Populus balsamifera isolate LOV02 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861661e-133GU286166.1 Populus balsamifera isolate FBK13 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861681e-133GU286168.1 Populus balsamifera isolate GAL12 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861701e-133GU286170.1 Populus balsamifera isolate INU03 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861721e-133GU286172.1 Populus balsamifera isolate RNA13 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861741e-133GU286174.1 Populus balsamifera isolate STO11 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861761e-133GU286176.1 Populus balsamifera isolate WHR03 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031172.11e-143PREDICTED: NAC domain-containing protein 18-like
SwissprotQ8GWK63e-65NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A2K2ACF61e-127A0A2K2ACF6_POPTR; Uncharacterized protein
STRINGPOPTR_0005s06510.11e-128(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-65xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]