PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022196.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 536aa    MW: 55885.8 Da    PI: 8.3805
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022196.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-057294123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  CCG022196.1 72 FVCEICNKGFQRDQNLQLHRRGH 94
                 89*******************88 PP

2zf-C2H211.10.0012148170123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H + +
  CCG022196.1 148 WKCDKCSKKYAVQSDWKAHSKIC 170
                  58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.19E-77194No hitNo description
Gene3DG3DSA:3.30.160.601.8E-57194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9497294IPR007087Zinc finger, C2H2
SMARTSM003550.0177294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM00355190113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-4136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.19E-7143168No hitNo description
SMARTSM00355150148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MPVDLDNSST ASGEASVSSS GNQPPPPPPP QQQPPSKSAA TAKKKRNLPG MPDPEAEVIA  60
LSPKTLLATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRSSKEVKK RVYVCPEPTC  120
VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHSKIC GTREYKCDCG  180
TLFSRRDSFI THRAFCDALA EESARAQTQT PNPNPKPNQE SDPKVQVDSS PPPAPLPPPV  240
APDFGSGQGQ APPGLAQSTG MISSPVLAIQ SPELSDDPAQ IIEEAPAPAP APAPATVTAG  300
FNGNFSSSTS SSSNGSSTSS VFASLFASST ASGSLQAPQT TAFTDLIHAM AHPDRPTDLT  360
PSPTEPISLC LSTNHGSSIF GTAGQERRQY APPPQPAMSA TALLQKAAQM GAAATNASLL  420
RGLGIVSSSS SSAQPDNMQW GHRQMEPENA SVTAGLGLGL PCDGGSGLKE LMMGTPSVFG  480
PKHATLDFLG LGMAAGGSPS GGLSALITSI GGGLDVAAAA ASFGGGEFSG KDMRRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35144212371Zinc finger protein JACKDAW
5b3h_F1e-35144212371Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025733.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9LVQ70.0IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLU5G4W20.0U5G4W2_POPTR; Uncharacterized protein
STRINGPOPTR_0007s12520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-142C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]