PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021363.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 392aa    MW: 45008.4 Da    PI: 8.6587
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021363.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001135158123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  y C  Cg+ F +++ +++H +  H
  CCG021363.1 135 YLCRVCGRNFYNNEKFVNHFKQiH 158
                  56*****************88766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10104.0E-952139IPR029060PIN domain-like
SuperFamilySSF576678.69E-5133161No hitNo description
PROSITE profilePS5015711.593135163IPR007087Zinc finger, C2H2
PROSITE patternPS000280137158IPR007087Zinc finger, C2H2
CDDcd061673.60E-18152287No hitNo description
PfamPF019363.7E-8207289IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10104.0E-9220275IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MLMFLKFRNF SHSIKSTRVK NQNPCFELCR FFHFDSKPGL GSSSLTPTLS PQKPQNNVAI  60
FWDLDNKPPK TVSPFEAAIK LKTAVCSFGF VKYMVAYANR HAFSYVPQVV REDRKQRKSL  120
NQLENKGVIK PVEPYLCRVC GRNFYNNEKF VNHFKQIHER EQQKRLNQIE SARGKRRVML  180
VGKYAMKMQK YKNAARDILT PKVGYGLADE LKRAGFWVRT VLDKPQAADV ALKDHMVDMM  240
DKRRAECFVL VSDDSDFVHV LKEAKSRCLK TVVVGDVNDG ALKRVADAGF SWQEILMGKA  300
KKDAETVVGR WKDRDVLKRL EWTYDPEVAK NLHGMVYEFD NHESKDECDG NDSEDGDIDN  360
ILDGDDVGCL QNEDARGWWE LDSNPDVTSQ SC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014805.10.0PREDICTED: uncharacterized protein LOC105118524
RefseqXP_011033904.10.0PREDICTED: uncharacterized protein LOC105132240
TrEMBLA0A2K2B5H70.0A0A2K2B5H7_POPTR; Uncharacterized protein
STRINGPOPTR_0003s11420.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-149C2H2 family protein