PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021234.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 297aa    MW: 32492.4 Da    PI: 8.9587
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021234.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034116138123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C++C+++F++   L  H  +H
  CCG021234.1 116 YQCKICNRRFPSFQALGGHKASH 138
                  9***********99998888877 PP

2zf-C2H212.80.00035196218123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  Fs+   L  H+r+H
  CCG021234.1 196 HECSICGDEFSSGQALGGHMRRH 218
                  78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.4E-12115140IPR007087Zinc finger, C2H2
SuperFamilySSF576671.37E-8116138No hitNo description
PROSITE profilePS5015711.448116143IPR007087Zinc finger, C2H2
SMARTSM003550.01116138IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
SuperFamilySSF576671.37E-8191218No hitNo description
PfamPF139127.0E-12195220IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.99196223IPR007087Zinc finger, C2H2
SMARTSM003550.022196218IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280198218IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGSQAMVSKE LSQIIKGKRA KRQRPSSPLT LAITCSSSSV GENGGERGQR IYNNSSSSDP  60
STSVKFTGRT DEEEDMANCL ILLAQGNRQN CKLSKPVNTA ATTITYTNKD AGLYAYQCKI  120
CNRRFPSFQA LGGHKASHKK SRPGNINEDK KALARTVRMG DQEEIGTDTD MTTNLSLQIV  180
NDGVLCSNNV KSNKVHECSI CGDEFSSGQA LGGHMRRHRA FAPTSTATAT TATLTSIRLE  240
RSKPDHESKE SKKPRDIQLL DLNLPAAEDD LRESKFHFAS KEQVLVFTAS SLVDCHY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004487.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLB9IFU21e-178B9IFU2_POPTR; Uncharacterized protein
STRINGPOPTR_0016s10790.11e-179(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.13e-54C2H2 family protein