PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020698.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 261aa    MW: 29546.8 Da    PI: 7.8863
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020698.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002992114123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C k F ++  L  H++ H
  CCG020698.1  92 FECQYCFKEFANSQALGGHQNAH 114
                  89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.6E-588118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.15E-688119No hitNo description
PROSITE profilePS5015711.2492119IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEKEGSNMFS SILDGDQNGH SAQYCTVEKK LRLFGFELNP CKNNKSCMKG CVEGDHESVN  60
SSNTVLSSER EKPVKEKSSS SGHHGPADDK KFECQYCFKE FANSQALGGH QNAHKKERLK  120
KKRLQLQARK ASLSCYLQPY QNNLCYNYQH GSSTTPWFFD PSCSTTPDQF TLYEESQISF  180
NPCEDSHLND SQISNWHAVP AQVIPFQQDT RYKFTFTHAD QRSIDYKPSP LLASKKTCKS  240
VDLQLDLSLQ SNIQSSSRTG I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007072.10.0PREDICTED: zinc finger protein 5-like
TrEMBLU5FXW81e-179U5FXW8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s04580.11e-179(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.13e-15zinc finger protein 5