PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v1.0, v2.0, v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG020409.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 164aa MW: 18031.7 Da PI: 7.4233

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG020409.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.6	4.3e-43	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+CakdCv+apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+ssl+ eA+ar+rdPvyG+vg i+ lq+q++ql+ +la+++ CCG020409.1 6 PCASCKLLRRRCAKDCVFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLMNEAKARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQ 103 7***********************************************************************************************99 PP DUF260 99 ee 100 +e CCG020409.1 104 AE 105 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.134	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.5E-43	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MGGNSPCASC KLLRRRCAKD CVFAPYFPSD DPHKFAIVHK VFGASNVSKM LQELPVHQRA 60 DAVSSLMNEA KARVRDPVYG CVGAISYLQN QVSQLQMQLA VAQAEILCIQ MQPEPVMPTS 120 QMGPDDDKSF LLQNSLSQHL NYGSSSNAIH DSLKRESIFG DMIS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011035872.1	1e-120	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	2e-74	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	B9HSJ7	1e-114	B9HSJ7_POPTR; Uncharacterized protein
STRING	POPTR_0010s19180.1	1e-114	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	9e-76	LBD family protein