PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020098.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 196aa    MW: 22161.9 Da    PI: 4.4529
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020098.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.11.3e-30101261128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGf F+Ptdeelv ++L++k++  +++  ++i+++++y ++Pw+L+ k+ ++ ++wy+Fs+  +        n++t++g+Wk+  ++++++s+ g+
  CCG020098.1  10 LPPGFVFSPTDEELVLHFLHRKASLLPCNP-DIIPDLGLYPHDPWQLEGKALSSGNQWYYFSRVME--------NQVTENGFWKSLDTEEPIFSSAGK 98 
                  79*************************999.99***************77778899******9755........6789******************** PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  +vglkk Lv+      +g++t+W+m+ey+l
  CCG020098.1  99 KVGLKKCLVYCI--GADGVETSWMMQEYHL 126
                  **********95..56788*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-389153IPR003441NAC domain
PROSITE profilePS5100536.64710155IPR003441NAC domain
PfamPF023658.4E-2011126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGDHGCSGNL PPGFVFSPTD EELVLHFLHR KASLLPCNPD IIPDLGLYPH DPWQLEGKAL  60
SSGNQWYYFS RVMENQVTEN GFWKSLDTEE PIFSSAGKKV GLKKCLVYCI GADGVETSWM  120
MQEYHLCNSK LSGTSYKRKK KLDCHQWILC RVYEREGSCI QNAGNTTDDD DGTELSCLDE  180
MFLSMDDDLD DISFPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-32915916169NO APICAL MERISTEM PROTEIN
1ut4_B8e-32915916169NO APICAL MERISTEM PROTEIN
1ut7_A8e-32915916169NO APICAL MERISTEM PROTEIN
1ut7_B8e-32915916169NO APICAL MERISTEM PROTEIN
3swm_A8e-32915919172NAC domain-containing protein 19
3swm_B8e-32915919172NAC domain-containing protein 19
3swm_C8e-32915919172NAC domain-containing protein 19
3swm_D8e-32915919172NAC domain-containing protein 19
3swp_A8e-32915919172NAC domain-containing protein 19
3swp_B8e-32915919172NAC domain-containing protein 19
3swp_C8e-32915919172NAC domain-containing protein 19
3swp_D8e-32915919172NAC domain-containing protein 19
4dul_A8e-32915916169NAC domain-containing protein 19
4dul_B8e-32915916169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165981e-131AC216598.1 Populus trichocarpa clone POP037-D13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022932.11e-146PREDICTED: NAC transcription factor 25-like
SwissprotQ8GWK66e-63NC104_ARATH; NAC domain-containing protein 104
TrEMBLB9HES91e-141B9HES9_POPTR; Uncharacterized protein
STRINGPOPTR_0007s04250.11e-142(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-60xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]