PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019944.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 119aa    MW: 13861.7 Da    PI: 7.5619
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019944.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.15.7e-12490188
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrs 88
                 f k+lt  d+  + r+++p +++e+   gg+  +s++l ++d+ g+   +++  +k+ g+     l+ GW++Fv + gL++gD+vv+++++++
  CCG019944.1  4 FSKALT--DTDVRFRFSFPTHCLEHLdfGGN--NSVDLHVKDSCGELRVIRC--WKRNGGydkPELRMGWRDFVADYGLRVGDMVVLHREDDH 90
                 667774..44455678***999966698766..799*********9999999..5555554557899*********************76654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.26E-13391IPR015300DNA-binding pseudobarrel domain
CDDcd100171.98E-143102No hitNo description
Gene3DG3DSA:2.40.330.107.8E-14392IPR015300DNA-binding pseudobarrel domain
PfamPF023625.3E-9591IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MQIFSKALTD TDVRFRFSFP THCLEHLDFG GNNSVDLHVK DSCGELRVIR CWKRNGGYDK  60
PELRMGWRDF VADYGLRVGD MVVLHREDDH NLGSQFRIEA KRSIKLFGKE DWGEVTRAN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103441e-157AC210344.1 Populus trichocarpa clone POP100-P10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385207.18e-76uncharacterized protein LOC18096617
RefseqXP_024452702.18e-76uncharacterized protein LOC112326845
TrEMBLU5GLC82e-74U5GLC8_POPTR; Uncharacterized protein
STRINGPOPTR_0003s01170.13e-75(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12594414