PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018621.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 370aa    MW: 43391.4 Da    PI: 8.4228
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018621.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.81.1e-066889223
                 EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 +C++Cg sF+ + +L +H+++H
  CCG018621.1 68 TCEKCGASFKKPAYLIQHMQSH 89
                 6*******************99 PP

2zf-C2H214.40.0001195119123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  +kC   dC+ s++rk++L+rH+  H
  CCG018621.1  95 FKCLfdDCHASYRRKDHLTRHLLQH 119
                  899999***************9887 PP

3zf-C2H222.13.9e-07124149123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                  ++C+  +C++ F  +snLkrHir  H
  CCG018621.1 124 FRCQieNCNREFVYPSNLKRHIRElH 149
                  89*********************988 PP

4zf-C2H218.55.4e-06164188123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  y C+   Cgk F+ +s L++H  +H
  CCG018621.1 164 YACQepGCGKAFRYPSKLRKHEDSH 188
                  789999***************9888 PP

5zf-C2H214.78.9e-05256280223
                  EET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                  kC+   C  +Fs+k nL++H +  H
  CCG018621.1 256 KCHfkGCQHTFSTKTNLNQHVKAvH 280
                  7*******************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.8712350IPR007087Zinc finger, C2H2
SMARTSM00355242345IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.4E-76789IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.0486794IPR007087Zinc finger, C2H2
SMARTSM003550.00736789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SuperFamilySSF576675.62E-1075127No hitNo description
Gene3DG3DSA:3.30.160.608.6E-1290121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.3995124IPR007087Zinc finger, C2H2
SMARTSM003550.04495119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097119IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-6122146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.09E-6122150No hitNo description
PROSITE profilePS5015712.736124154IPR007087Zinc finger, C2H2
SMARTSM003550.0015124149IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280126149IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.2E-10160188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.48E-6160188No hitNo description
SMARTSM003550.004164188IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.531164193IPR007087Zinc finger, C2H2
PROSITE patternPS000280166188IPR007087Zinc finger, C2H2
SMARTSM003550.8196221IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280198221IPR007087Zinc finger, C2H2
SMARTSM0035518224245IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.1E-6237292No hitNo description
PROSITE profilePS5015711.572255285IPR007087Zinc finger, C2H2
SMARTSM003550.0018255280IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4256283IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280257280IPR007087Zinc finger, C2H2
SMARTSM0035513286312IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280288312IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MAMMEEEQEE KERPVIFRDI RRYYCDYCGI CRSKKSLITS HVLTHHKEEM DEESVDGDEG  60
KEGVKSNTCE KCGASFKKPA YLIQHMQSHS LERPFKCLFD DCHASYRRKD HLTRHLLQHE  120
GKLFRCQIEN CNREFVYPSN LKRHIRELHD ESSPSSSFGG EKQYACQEPG CGKAFRYPSK  180
LRKHEDSHVS LDHVEAMCLE PGCMKHFSNK ECLKAHIQSS HQYINCDICG TKQLKKNIKR  240
HLRTHEPASD SIERIKCHFK GCQHTFSTKT NLNQHVKAVH LEHRPFLCGF PGCDMRFAYK  300
HVRDNHEKSG LHVYTPGDFV ESDRQFRSKP RGGRKRKFPT VEMLIRKRVT PPTKLDECHP  360
LLHEIEREDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A3e-156324518184Aart
2i13_B3e-156324518184Aart
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001093.10.0PREDICTED: zinc finger protein 37-like
SwissprotQ84MZ41e-142TF3A_ARATH; Transcription factor IIIA
TrEMBLU5FVV90.0U5FVV9_POPTR; Uncharacterized protein
STRINGPOPTR_0013s11300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-143transcription factor IIIA