PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017801.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 474aa    MW: 52065.3 Da    PI: 8.8666
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017801.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-0580102123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F r  nL+ H r H
  CCG017801.1  80 FVCEICNKGFQRDQNLQLHRRGH 102
                  89*******************88 PP

2zf-C2H212.30.00053156178123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H +t+
  CCG017801.1 156 WKCEKCSKIYAVQSDWKAHSKTC 178
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-579102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.63E-679102No hitNo description
PfamPF121717.5E-580102IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01780102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94980102IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM00355260121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-4144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.63E-6151176No hitNo description
SMARTSM00355170156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MFPAAMSNST SLSEEASVSS GTRIQDFGSL NQLASTISPL QQQQQQQRTI KKKRNLPGNP  60
DPDAEVIALS PKTLLTTNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNSKEIKKKA  120
YVCPEPTCVH HHPSRALGDL TGIKKHYCRK HGEKKWKCEK CSKIYAVQSD WKAHSKTCGT  180
REYRCDCGTL FSRKDSFITH RAFCDALAEE SARLSAHQLI ISQNPNAHAL LLQNPLQTHH  240
PHSLFSTPAH HQISFTSPWD PPHHQNPCSN NPQNPVHIKP ETTGHFQISA SLLQEPPLAM  300
PSHKGLLAPT FQSLSNAATS QAPSHHLSAT ALLQKAASVG ATQTSVGHSH MTQLDMGELG  360
SAGQVHVDSV SHVSQGPSYN LNSLATWQKS DRLTRDFLGL TAPECGDHHG HAASNANGSG  420
GSVNVSMNVR EILTYTGGVG FHQQQYNERD HSLLKPHGGF GFAQPSASEA WGDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35152216367Zinc finger protein JACKDAW
5b3h_F2e-35152216367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4617241e-119AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026098.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotO227591e-131IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLB9GSI60.0B9GSI6_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-125indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]