PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017750.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 196aa    MW: 22455.5 Da    PI: 9.2345
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017750.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00023860123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ F +   L  H+++H
  CCG017750.1 38 YSCNFCKRQFISAQALGGHMNVH 60
                 99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.46E-73564No hitNo description
Gene3DG3DSA:3.30.160.604.2E-43662IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9493865IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MVKKYPQGSS TVKDKWEKNN AIFQGEHSSV FSWPQRNYSC NFCKRQFISA QALGGHMNVH  60
RRDRAKLRQL PSWFFKCPKY PTSNPNPDHL LSSSSKFLPY PDDHTHDHSP YLSSFSSPSC  120
REKKSIVESN ESKELTKKKS NAGAVFGVGE LKKNFAQECD QLEVLRRSET INLDMKMGCE  180
DPKEVLDLEL RLGLLV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026016.11e-146PREDICTED: transcriptional regulator SUPERMAN
TrEMBLA0A2K2AKL51e-119A0A2K2AKL5_POPTR; Uncharacterized protein
STRINGPOPTR_0005s24280.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.12e-25zinc finger protein 11