PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017395.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 370aa    MW: 42345.9 Da    PI: 8.3341
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017395.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.72.2e-18269359498
                  E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  vl ps+  + ++++lp  fae++ +g++     ++l+ ++g++W v++ yr+++    +++GW eF  +n+L egD+++F+l ++++  l+v++fr
  CCG017395.1 269 VLRPSYLYRGCIMYLPSGFAEKNlNGVSG---FIILQLPDGKQWPVRCLYRGGR--AKFSQGWYEFTLENNLGEGDVCIFELLKSRDVVLKVTLFR 359
                  78899******************876743...5999************666665..5699*********************998888889999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.065187IPR003340B3 DNA binding domain
SMARTSM010190.0032287IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-15785IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-141085IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-101085No hitNo description
Gene3DG3DSA:2.40.330.104.3E-24258359IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-25260359IPR015300DNA-binding pseudobarrel domain
CDDcd100172.21E-23264359No hitNo description
SMARTSM010199.4E-22266361IPR003340B3 DNA binding domain
PROSITE profilePS5086313.987266361IPR003340B3 DNA binding domain
PfamPF023621.4E-16269359IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MLCTIRKWDR IPDNFVKKFG HDISSFVRLI VPGGHVSRIG LIKADEKLWF HDGWQQFVER  60
FAIHIGYFLI FQYEGNAIFN VHIFNLPTSE INYHSNSLSG KRYLAFEELD NDENAENSGI  120
PPPQLIVNKS YNPPPLQNLF SGSKLNNCIN WSGEDTMRLT KGSSISQVAN ESARNVGAHY  180
NELYNSQDEV KLYSPDGETP KPKKRGRKRL KADPNEQQLS SPHDDDSEMR FRFYESASAR  240
KRTVTAEERE RAMNAAKAYA PDNPYCRVVL RPSYLYRGCI MYLPSGFAEK NLNGVSGFII  300
LQLPDGKQWP VRCLYRGGRA KFSQGWYEFT LENNLGEGDV CIFELLKSRD VVLKVTLFRV  360
LEDGGLMNHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-7323236215144B3 domain-containing transcription factor VRN1
4i1k_B5e-7323236215144B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205211GRKRLKA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999692.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
SwissprotQ8L3W11e-128VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLU5G3W50.0U5G3W5_POPTR; Uncharacterized protein
STRINGPOPTR_0009s11170.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-124B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]