PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017268.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 329aa    MW: 36579.8 Da    PI: 7.6287
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017268.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.83e-18248281134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs+C++ kTp+WR gp g ktLCnaCG++y++ +
  CCG017268.1 248 CSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGR 281
                  *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.6E-849327IPR016679Transcription factor, GATA, plant
SuperFamilySSF577163.33E-14241304No hitNo description
SMARTSM004014.4E-14242296IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.385242278IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-14246279IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.00E-13247304No hitNo description
PROSITE patternPS003440248273IPR000679Zinc finger, GATA-type
PfamPF003204.1E-16248281IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEFRVEKRAL KSSLLRELDT KTTSEQAFCE DFLALNTPGV VSCDQDFSVD CFLDFSNGEF  60
KDGYVQEQEE EKDSISVSSQ DRVDDDFNSN SSSFSDSFLA SELAVPTDDI AELEWVSHFV  120
DDSVSDVSLL VPACKGSSKR HAKNWFEPET KPTFAKTSCV FPSRVPSKAR TKRSRPTGRT  180
WAAGSNQSET PSSSTSSTSS MPCLVATNTV QTADSLSWLS EQPMKNSKKR LAVHTSGLMA  240
STQFQRRCSH CQVQKTPQWR TGPLGAKTLC NACGVRYKSG RLFPEYRPAC SPTFSSEVHS  300
NSHRKVLEMR RKKEVAGAEP RLNQMVPSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047468.10.0PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH572e-64GATA5_ARATH; GATA transcription factor 5
TrEMBLB9HRG70.0B9HRG7_POPTR; Uncharacterized protein
STRINGPOPTR_0009s12620.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.26e-56GATA transcription factor 5